Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M14
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    77   4e-15
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    75   1e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    70   5e-13

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 44/111 (39%), Positives = 58/111 (52%)
 Frame = +1

Query: 232 VSKAELACVYSALILVDDDVAVTGEKISTXLKAAAVDVEPYWPGLFAKALEGINVRDLIT 411
           +S +ELA  YSALIL D+ + +T +K+ +  KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 412 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDXDMGFGLXD 564
           NIGSG                                   SD DMGFGL D
Sbjct: 61  NIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 43/111 (38%), Positives = 57/111 (51%)
 Frame = +1

Query: 232 VSKAELACVYSALILVDDDVAVTGEKISTXLKAAAVDVEPYWPGLFAKALEGINVRDLIT 411
           +S +ELA  YSALIL D+ + +T +K+ +  KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 412 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDXDMGFGLXD 564
           NIGS                                    SD DMGFGL D
Sbjct: 61  NIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 40/111 (36%), Positives = 56/111 (50%)
 Frame = +1

Query: 232 VSKAELACVYSALILVDDDVAVTGEKISTXLKAAAVDVEPYWPGLFAKALEGINVRDLIT 411
           +S +ELA  Y+ALIL D+ + +T +K+ +  KA  V+VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 412 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDXDMGFGLXD 564
           NIGS                                    SD DMGFGL D
Sbjct: 61  NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,877
Number of Sequences: 5004
Number of extensions: 25723
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)