Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M13
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    88   1e-18
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   4.8  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 43/101 (42%), Positives = 62/101 (61%)
 Frame = -2

Query: 663 LGKLFXQEAYTYRDPITXXIXHLYVNFDFEAARRKLNQCQAVLLTDFXLIACLEEFVENA 484
           L ++  QE Y Y DP+T  I  LY   DFE A+  L +C+ VL TDF L++  + F+E A
Sbjct: 297 LVRIISQENYEYSDPVTSFISALYTEVDFEKAQHCLRECEEVLKTDFFLVSLCDHFLEGA 356

Query: 483 RLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRN 361
           R ++ E +CRIH VIS+ +LA  L M  D A+  ++ L+ N
Sbjct: 357 RKLLAEAYCRIHSVISVDVLANKLEM--DSAQ--LIQLVEN 393


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 216 VSXPLMKSELRISLPVNRFSQLIVDMAXEVVHPSPRD-LTWNRSSR-PGAHYGLSSRSSI 389
           +S   + S+   S   + F ++I D+    +  S  D  T+++SSR PG H+G + RS  
Sbjct: 528 ISTTTVSSDATRSSQSSHF-RIIEDLPDSKLKYSLEDQATYDQSSRYPGRHFGKTGRSHF 586

Query: 390 P 392
           P
Sbjct: 587 P 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,289
Number of Sequences: 5004
Number of extensions: 38622
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)