Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_M13
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 145 5e-35
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 140 1e-33
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 134 1e-31
04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21... 31 1.2
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 2.2
06_03_0675 - 23428948-23431389 30 2.9
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 145 bits (351), Expect = 5e-35
Identities = 78/194 (40%), Positives = 115/194 (59%), Gaps = 11/194 (5%)
Frame = -2
Query: 738 PTSXRYLGNCXXSXTGXXRKXXEXPLGKLFXQEAYTYRDPITXXIXHLYVNFDFEAARRK 559
P RYL R+ L K+ QE ++Y+DPIT + LYVN+DF+ A++K
Sbjct: 248 PHLLRYLATAVV--VNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLYVNYDFDGAQQK 305
Query: 558 LNQCQAVLLTD-----------FXLIACLEEFVENARLMIFETFCRIHQVISIGMLAENL 412
L +C+ V+L D F + +EF+ENARL IFET+CRIH+ I IGML++ L
Sbjct: 306 LIECEQVILNDPFLGKRIEEGNFVTVPLRDEFLENARLFIFETYCRIHRCIDIGMLSQKL 365
Query: 411 NMQPDEAECWIVNLIRNARLDAKIDSKLGHVVMGAQPXSPYQQLVERIDSLAVRSEALTS 232
NM DEAE WI+NL+RN++LDAKIDS G ++M + ++Q++E + +L +R+ L
Sbjct: 366 NMSYDEAELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQVIESLKNLNMRTFLLAK 425
Query: 231 LVXRKHKARXQDIR 190
+ +A Q R
Sbjct: 426 NIVEPAQAAQQAAR 439
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 140 bits (340), Expect = 1e-33
Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 11/194 (5%)
Frame = -2
Query: 738 PTSXRYLGNCXXSXTGXXRKXXEXPLGKLFXQEAYTYRDPITXXIXHLYVNFDFEAARRK 559
P RYL R+ L K+ QE ++Y+DPIT + L+VN+DF+ A++K
Sbjct: 224 PHLLRYLATAVV--VNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLFVNYDFDGAQQK 281
Query: 558 LNQCQAVLLTDFXL-----------IACLEEFVENARLMIFETFCRIHQVISIGMLAENL 412
L +C+ V+L D L + +EF+ENARL IFET+CRIH+ I IGML++ L
Sbjct: 282 LIECEEVILNDPFLGKRIEEGNSITVPLRDEFLENARLFIFETYCRIHRSIDIGMLSQKL 341
Query: 411 NMQPDEAECWIVNLIRNARLDAKIDSKLGHVVMGAQPXSPYQQLVERIDSLAVRSEALTS 232
NM+ DE E WI+NL+RN++LDAKIDS G ++M + ++Q +E + +L +R+ L
Sbjct: 342 NMRYDEGELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQFIESLKNLNMRTSMLAK 401
Query: 231 LVXRKHKARXQDIR 190
+ +A Q R
Sbjct: 402 NIVEPAQAMQQATR 415
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 134 bits (323), Expect = 1e-31
Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 11/150 (7%)
Frame = -2
Query: 663 LGKLFXQEAYTYRDPITXXIXHLYVNFDFEAARRKLNQCQAVLLTDFXL----------- 517
L K+ QE ++Y+DPIT + LYVN DF+ A++KL +C+ V+L D L
Sbjct: 262 LVKVIQQEQHSYKDPITEFLECLYVNHDFDGAQQKLIECEQVILNDPFLGKRIEEGNSIT 321
Query: 516 IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 337
+ +EF+ENARL+IFE++CRIH+ I IGML+E L M +EAE WI+NL+ N++LDAKID
Sbjct: 322 VPLRDEFLENARLLIFESYCRIHRCIHIGMLSEKLKMSYNEAELWIMNLVSNSKLDAKID 381
Query: 336 SKLGHVVMGAQPXSPYQQLVERIDSLAVRS 247
+ G ++M A + +QQ +E + +L +R+
Sbjct: 382 TASGTLIMTANHANIHQQFIESLKNLDMRT 411
>04_01_0012 -
210670-210759,210939-211008,211138-211235,211318-211427,
211533-211683,212247-212391,212483-212749,212819-212957,
213036-213270
Length = 434
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -2
Query: 561 KLNQCQAVLLTDFXLIACLEEFVENARLM-IFETFCRIHQVISIGMLAENLNMQPDEAEC 385
+ + LL + L+ E+ + RLM + + R I + + L + DE E
Sbjct: 300 EFQSANSALLKGYGLVH--EDCITKMRLMSLLDLSSRCAGEIPYHAIIDALKINDDEVEY 357
Query: 384 WIVNLIRNARLDAKIDSKLGHVVM 313
WIV I LD K+D +L V++
Sbjct: 358 WIVKAISCKILDCKVD-QLNQVII 380
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 240 ELRISLPVNRFSQLIVDMAXEVVHPSPRDLTWNRSS 347
E RIS NR QL+VD ++ P RD WN S
Sbjct: 140 EARISTAKNRLKQLLVDALSKIAIPMARD-RWNGMS 174
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 435 IGMLAENLNMQPDEAECWIVNLIRNARLDAKID 337
+ MLAEN+ +Q D WI N I ++RL+ + +
Sbjct: 740 VRMLAENVKLQEDSERSWITNFI-DSRLNGQFN 771
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,151
Number of Sequences: 37544
Number of extensions: 236246
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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