Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M13
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   143   2e-34

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  143 bits (346), Expect = 2e-34
 Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 1/143 (0%)
 Frame = -2

Query: 663 LGKLFXQEAYTYRDPITXXIXHLYVNFDFEAARRKLNQCQAVLLTDFXLIACLEEFVENA 484
           L K+   E ++Y+DP+T  +  LY+ +DF+ A+  L +C+ VL  DF L A L +F E+A
Sbjct: 275 LVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFLTAVLGDFRESA 334

Query: 483 RLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLD-AKIDSKLGHVVMGA 307
           RL+IFE FCRIHQ I+I MLA  LNM  +EAE WIV+LIR  R++ AKIDSKLG VVMG 
Sbjct: 335 RLLIFEMFCRIHQCITIEMLARRLNMSQEEAERWIVDLIRTYRIEGAKIDSKLGQVVMGV 394

Query: 306 QPXSPYQQLVERIDSLAVRSEAL 238
           +  S ++Q++E    L +R++ +
Sbjct: 395 KSVSIHEQVMENTKRLTLRAQQI 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,077
Number of Sequences: 27780
Number of extensions: 209986
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)