Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_M10
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 87 1e-17
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 87 1e-17
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 31 1.6
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 30 2.1
01_01_0652 + 4975091-4975585 29 3.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 29 4.8
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 29 4.8
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLR 277
D +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W R
Sbjct: 241 DVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKR 299
Query: 278 RNTLQLRRKR 307
T+ LRR R
Sbjct: 300 NQTVSLRRYR 309
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 52 WVAQDSSYKYFEVIL 96
WV +DS+YKYFE+IL
Sbjct: 225 WVNEDSTYKYFEIIL 239
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLR 277
D +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W R
Sbjct: 136 DVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKR 194
Query: 278 RNTLQLRRKR 307
T+ LRR R
Sbjct: 195 NQTVSLRRYR 204
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 52 WVAQDSSYKYFEVIL 96
WV +DS+YKYFE+IL
Sbjct: 120 WVNEDSTYKYFEIIL 134
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = -2
Query: 367 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 188
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 187 QTTHL 173
+ T +
Sbjct: 2018 ELTEV 2022
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 179 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 301
+ L GR + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 191 SAGRSSRGLGKGHRYSQTKGGSRRAAW 271
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 680 NESAN---ARGEAVCVLGALPLPRSLTRCARSFXLRRAVSA 793
+ESAN AR EAV +G +P+ L RC+R A A
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSRESAQSEAAKA 474
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 131 PKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWL 274
P+++ VH+ RG ++AG R G S G SRR AWL
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRR-AWL 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,315,577
Number of Sequences: 37544
Number of extensions: 336523
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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