Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M09
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.67 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.88 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   8.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.2  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 579 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 478
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 673
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST   P+TP
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTP 357



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 673
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST   P+TP
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTP 411



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 673
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +    SS++  P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 673
           +TP   P   S  S+P P   T+   + S P  T ST  + +  +     S+T + P  P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 503 PKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAP 664
           P T  +     S P P   T+  TS S PP  NST + +T  V   + SST   P
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP 317


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 672 GVSGAITVDDTVIT 631
           G+ GAIT+DD++IT
Sbjct: 120 GIEGAITLDDSIIT 133


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 519
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,550
Number of Sequences: 5004
Number of extensions: 58191
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)