Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M08
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944           95   9e-20
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254     95   9e-20
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907     95   9e-20
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946...    29   5.0  
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124...    29   6.7  

>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
          Length = 51

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 40/49 (81%), Positives = 45/49 (91%)
 Frame = +3

Query: 81  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 227
           M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
          Length = 51

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 40/49 (81%), Positives = 45/49 (91%)
 Frame = +3

Query: 81  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 227
           M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
          Length = 51

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 40/49 (81%), Positives = 45/49 (91%)
 Frame = +3

Query: 81  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 227
           M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>04_04_0689 -
           27292271-27292709,27293717-27293856,27294572-27294664,
           27295614-27296012,27296258-27296392,27296482-27296835
          Length = 519

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 685 EXXXGPKXQXXXSPGGGXVF*XXXKPPXPPPGXEKXKE 572
           E   GPK +    PGG  +      PP PPPG  K K+
Sbjct: 64  EASRGPKHRRRRRPGGRRL------PPPPPPGRRKGKD 95


>09_02_0565 +
           10710770-10711003,10711368-10711527,10712277-10712477,
           10712564-10712628,10712740-10712767,10712847-10712923,
           10713023-10713109,10713572-10713622,10713857-10713937,
           10714125-10714346,10714424-10714517,10714608-10714748,
           10716383-10716444,10716519-10717106
          Length = 696

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 93  KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKR 203
           K  IIKR+ AK+L+Q    P++  + TG     +AKR
Sbjct: 214 KETIIKREAAKRLEQTSEEPEYAPLPTGPGAVADAKR 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,318,912
Number of Sequences: 37544
Number of extensions: 230851
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)