Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M06
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    47   2e-05
Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    33   0.20 
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        33   0.20 
Z81537-8|CAB04380.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    30   2.5  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    29   4.4  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    29   4.4  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    29   4.4  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    29   4.4  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z99281-15|CAB16528.1|  199|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    28   7.6  
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    28   7.6  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 603 ENDGKPNDVEETMCRNFVRNTCNRGASCRYLHKIIHSQLKG-VYRFCIDFENKSAHVQN 776
           E++ +     + +CR+F++N CNRG+ C++ H      +    Y FCID++N+     N
Sbjct: 46  EHNKQQQQQRDDVCRDFLKNICNRGSRCKFYHPSEAPPISDHDYNFCIDYQNRGCQRDN 104


>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 597 PTENDGKPNDVEETMCRNFVRNTCNRGASCRYLH 698
           P+ N G  N     +C NF R  C  G  CR++H
Sbjct: 177 PSNNHGSSN--RRQICHNFERGNCRYGPRCRFIH 208


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 597 PTENDGKPNDVEETMCRNFVRNTCNRGASCRYLH 698
           P+ N G  N     +C NF R  C  G  CR++H
Sbjct: 177 PSNNHGSSN--RRQICHNFERGNCRYGPRCRFIH 208


>Z81537-8|CAB04380.1|  343|Caenorhabditis elegans Hypothetical
           protein F41D3.9 protein.
          Length = 343

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -1

Query: 306 HPLYSGNLSGLRLSFAFISFTPKRSLKHLEFLSQNNSHY 190
           HP +   L GL +S AFI   P+R  KH EF   N S Y
Sbjct: 121 HPRHKYILYGLNMSEAFIEKLPQRD-KHFEFRVFNTSQY 158


>Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical
           protein W05B10.2 protein.
          Length = 200

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 579 INIKTDPTENDGKPNDVEETMCRNFVRNTCNRGASCRYLHKIIHSQLKGVYRFCIDFENK 758
           +++   P+E + K +   +  C+N+++  C  G  CR+ H + +     V    I  E K
Sbjct: 121 VDLSDKPSEKERKKS---KFTCKNYLKGKCRFGDKCRFSHPVHNRSSDAVNEVSISSEAK 177


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 624 DVEETMCRNFVRNTCNRGASCRYLH-KIIHSQL 719
           D  E+ CR     TC++G  C ++H K I ++L
Sbjct: 158 DFRESRCRQHEVTTCSKGGFCNFMHLKAISAEL 190


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 534 KEIVNEEYIDTSSITINIKTDPTENDGKPNDVEE 635
           KE +  +Y  T+ +   +KTDP  N+G PN+ EE
Sbjct: 23  KEKIETDYGGTTGLCERLKTDP--NNGLPNNEEE 54


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 534 KEIVNEEYIDTSSITINIKTDPTENDGKPNDVEE 635
           KE +  +Y  T+ +   +KTDP  N+G PN+ EE
Sbjct: 23  KEKIETDYGGTTGLCERLKTDP--NNGLPNNEEE 54


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 534 KEIVNEEYIDTSSITINIKTDPTENDGKPNDVEE 635
           KE +  +Y  T+ +   +KTDP  N+G PN+ EE
Sbjct: 23  KEKIETDYGGTTGLCERLKTDP--NNGLPNNEEE 54


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 534 KEIVNEEYIDTSSITINIKTDPTENDGKPNDVEE 635
           KE +  +Y  T+ +   +KTDP  N+G PN+ EE
Sbjct: 23  KEKIETDYGGTTGLCERLKTDP--NNGLPNNEEE 54


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -2

Query: 419 EFCYCMILGRVTLLPKLAF*IFFHMFEIR*WLKINRIFIPYTLEICLACV*ASHLFLLPQ 240
           +F +C +     +LP L F     +F    W+ I        + I   CV +S+++LL  
Sbjct: 77  DFIFCTLSTTYVILPMLGF-FGVGVFS---WMGIPYSVQLAFIVITALCVASSYVYLLEG 132

Query: 239 KGHSNI*NSFR 207
           + HS + N FR
Sbjct: 133 RSHSLLQNKFR 143


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 615 KPNDVEETMCRNF-VRNTCNRGASCRYLHKIIHSQLK 722
           K N  +  +C+ F +   C+ G  C++ H +   QLK
Sbjct: 69  KENAFKTALCKTFQLTRACSYGEQCKFAHSVEELQLK 105


>Z99281-15|CAB16528.1|  199|Caenorhabditis elegans Hypothetical
           protein Y57G11C.25 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 558 IDTSSITINIKTDPTENDGKPNDVEETMCRNF-VRNTCNRGASCRYLHKIIHSQLK 722
           ++  +I+ +++ +      + N  +  +C+ F +   C+ G  C++ H +   QLK
Sbjct: 46  VNPCTISDDVREEMMRLRRRENAFKTALCKTFQLTKACSYGEQCKFAHSVEELQLK 101


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 306 EDSINFQPSPNFKHMKKYLKCKFGEESHSPQYHA-----VTEFPEAEAMEKKGNEQTEK 467
           +D+  +      KH++   K +  EE    +  A     V    +AEA+EKK  EQ EK
Sbjct: 196 QDNQKYHDEERKKHIETQKKAEENEEKRRAKEKADRDAHVARHKQAEALEKKKREQEEK 254


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 633 ETMCRNFVRNTCNRGASCRYLHKI 704
           ET CR F    C++G +C + H +
Sbjct: 5   ETDCRYFANGYCSKGNTCTFTHDV 28


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 633 ETMCRNFVRNTCNRGASCRYLHKI 704
           ET CR F    C++G +C + H +
Sbjct: 5   ETDCRYFANGYCSKGNTCTFTHDV 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,518,929
Number of Sequences: 27780
Number of extensions: 382480
Number of successful extensions: 944
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)