Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_M03
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.40
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 32 0.54
02_04_0382 - 22501041-22501279,22501717-22501810 32 0.71
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 1.2
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.9
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.8
06_01_0438 + 3110703-3111945,3112486-3113057 29 5.0
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 28 8.7
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 161 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 310
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 229 AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 65
A I +++G ++D ++F+ +S QS+DEN + H + +YH +K
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 31.9 bits (69), Expect = 0.71
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 101 KFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGR 280
K ++F L L A A + P +D P+ Y+P + YY DPP
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYY-DPPHSP 69
Query: 281 PYFKPTPFP 307
Y+ P P P
Sbjct: 70 DYYDPPPSP 78
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 104 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDP 268
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY DP
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 269 PQGRPYFKPTPFP 307
P Y+ P P P
Sbjct: 75 PPSPDYYDPPPSP 87
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 161 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPG 310
Y P + P V PP Y P +G P N + Y +PP GRP P P G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 179 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 295
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 149 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 304
QG Y+P R PP+ P Y P G Y PQG+PY P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 167 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 307
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 575 HCILVVVCPNSSMYLIMSGSX*PSXKGRSAAAVP 474
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +2
Query: 146 AQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGCSRWE 325
+ NG P+ + PP P+ NGA PP G P P PG + ++
Sbjct: 639 SMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPGGNPAPPAGPQPGVNMFD 698
Query: 326 VKNI 337
+ +
Sbjct: 699 LNEL 702
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,444
Number of Sequences: 37544
Number of extensions: 385134
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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