Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_M01
(1283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0299 - 17051570-17052474,17053542-17053755 38 0.017
06_03_1153 - 28047125-28047751 35 0.16
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 31 2.6
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 31 2.6
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 30 4.5
06_01_0486 - 3455030-3455770 30 4.5
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 29 7.9
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909... 29 7.9
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 37.9 bits (84), Expect = 0.017
Identities = 43/137 (31%), Positives = 46/137 (33%), Gaps = 7/137 (5%)
Frame = -1
Query: 1007 PPXFFXXP----PFFXP-LXPPPXF-FFXPPXXFXXPPFFFFFXPXXSPFFXXXXXXXXX 846
PP F P PF P PPP F F PP + PP F F P P F
Sbjct: 236 PPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPF--PHLPPIF-------SP 286
Query: 845 XXFPPXNPXXFXXXXFFSFLXXXXFPXXXP-PXFLTPPFXXXXXGGXXSPXXXPPPGXPP 669
PP P F F F P P P F P P PPP PP
Sbjct: 287 PSPPPPPPPAFP----FPFPQLPPLPHFPPLPSFYPSP-----------PPPPPPPPPPP 331
Query: 668 PXFXXFSLXXXGVFPPF 618
P F +FPP+
Sbjct: 332 PSFPWPFPPLAPLFPPY 348
>06_03_1153 - 28047125-28047751
Length = 208
Score = 34.7 bits (76), Expect = 0.16
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 1007 PPXFFXXPPFFXPLXPPPXFFFXPPXXFXXPP 912
PP F PP P PPP F+ P + PP
Sbjct: 11 PPAIFCPPPLSPPPPPPPIFYSPPDVSYFSPP 42
Score = 32.7 bits (71), Expect = 0.64
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 1008 PPXXFXXPPLFXPPFXPPXXFFXPPXXFXXPP 913
PP F PPL PP PP + P + PP
Sbjct: 11 PPAIFCPPPLSPPPPPPPIFYSPPDVSYFSPP 42
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 773 FPXXXPPXFLTPPFXXXXXGGXXSPXXXPPPGXPP 669
FP PP PPF G P PPPG PP
Sbjct: 382 FPPPPPPPDTRPPFMAP--GVNARPLPPPPPGLPP 414
>01_07_0021 - 40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 30.7 bits (66), Expect = 2.6
Identities = 29/114 (25%), Positives = 31/114 (27%)
Frame = -1
Query: 1007 PPXFFXXPPFFXPLXPPPXFFFXPPXXFXXPPFFFFFXPXXSPFFXXXXXXXXXXXFPPX 828
PP PP PPP PP PP F P S F P
Sbjct: 430 PPPPPEHPPPPESTSPPPPPTSDPPPVPPPPPTTGSFMPIPSAPFAGLPVPAGPMTAVPY 489
Query: 827 NPXXFXXXXFFSFLXXXXFPXXXPPXFLTPPFXXXXXGGXXSPXXXPPPGXPPP 666
N + + P P TPP G P PP PPP
Sbjct: 490 NSYPVFPPMNYPMVN---IPPPFPSAPNTPPGFQGLAGPFYGPPYPAPPPPPPP 540
>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 1007 PPXFFXXPPFFXPLXPPPXFFFXPPXXFXXPPFFFFFXPXXSPF 876
PP ++ PP P PPP PP + PP P +P+
Sbjct: 407 PPLYYPPPPDISP-SPPPSVTPLPPVVYPSPPEVTPSPPEIAPY 449
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.9 bits (64), Expect = 4.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 1248 PPXXXXXXPXFXPPPXXFFXPPPLFXXPXFFXXPP 1144
PP P + PPP + PPP P + PP
Sbjct: 105 PPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPP 139
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 29.1 bits (62), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 986 PPFFXPLXPPPXFFFXPPXXFXXPP 912
PP P PPP + + PP PP
Sbjct: 291 PPMMMPPPPPPEYLYGPPGMRSSPP 315
>02_05_1258 + 35290183-35290198,35290292-35290599,35290844-35290939,
35291067-35291144,35291224-35291400,35292738-35292806,
35292917-35293093
Length = 306
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 1164 GGXKKGGGXKKXGXGGXKXGGXXXXXGGEXXKKXXKKXGG 1283
GG +GGG G GG + GG GG K G
Sbjct: 38 GGRGRGGGRTPRGRGGGRGGGRGGMKGGSKVVVVPHKHNG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.301 0.140 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,717
Number of Sequences: 37544
Number of extensions: 370587
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
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