Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_M01
(1283 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 33 0.58
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 33 0.58
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 2.3
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 31 2.3
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 31 2.3
U64845-3|AAC48032.2| 312|Caenorhabditis elegans Hypothetical pr... 29 9.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 9.4
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 32.7 bits (71), Expect = 0.58
Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = -1
Query: 1007 PPXFFXX--PPFFXPLXPPPXFFFXPPXXFXXPPF-FFFFXPXXSPFFXXXXXXXXXXXF 837
PP F PP F P PPP F PP F PP F PFF
Sbjct: 308 PPHFMGRGMPPPFMP--PPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRPSS 365
Query: 836 PP 831
PP
Sbjct: 366 PP 367
Score = 30.7 bits (66), Expect = 2.3
Identities = 27/98 (27%), Positives = 27/98 (27%)
Frame = -3
Query: 1248 PPXXXXXXPXFXPPPXXFFXPPPLFXXPXFFXXPPFFXXFFXXSPPXXXXXXXXXXXXXX 1069
PP PPP FF PPP P PP F PP
Sbjct: 278 PPHPMHHPYAMMPPPFGFFPPPPRGHFP---PPPPHFMG-RGMPPPFMPPPPHFGMGPPR 333
Query: 1068 XXXXXXXXXXXXXFXYXGFFPPXXFXXPPLFXPPFXPP 955
Y FFPP PP F P PP
Sbjct: 334 GFMPPPHPMMFRGGPYPPFFPP----PPPHFMRPSSPP 367
Score = 30.3 bits (65), Expect = 3.1
Identities = 27/105 (25%), Positives = 29/105 (27%)
Frame = -1
Query: 995 FXXPPFFXPLXPPPXFFFXPPXXFXXPPFFFFFXPXXSPFFXXXXXXXXXXXFPPXNPXX 816
+ PP P PP P PPF FF P F PP P
Sbjct: 267 YRGPPPHHPYGPPHPMHH--PYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPP 324
Query: 815 FXXXXFFSFLXXXXFPXXXPPXFLTPPFXXXXXGGXXSPXXXPPP 681
F P F+ PP GG P PPP
Sbjct: 325 ------------PHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPP 357
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 32.7 bits (71), Expect = 0.58
Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = -1
Query: 1007 PPXFFXX--PPFFXPLXPPPXFFFXPPXXFXXPPF-FFFFXPXXSPFFXXXXXXXXXXXF 837
PP F PP F P PPP F PP F PP F PFF
Sbjct: 308 PPHFMGRGMPPPFMP--PPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRPSS 365
Query: 836 PP 831
PP
Sbjct: 366 PP 367
Score = 30.7 bits (66), Expect = 2.3
Identities = 27/98 (27%), Positives = 27/98 (27%)
Frame = -3
Query: 1248 PPXXXXXXPXFXPPPXXFFXPPPLFXXPXFFXXPPFFXXFFXXSPPXXXXXXXXXXXXXX 1069
PP PPP FF PPP P PP F PP
Sbjct: 278 PPHPMHHPYAMMPPPFGFFPPPPRGHFP---PPPPHFMG-RGMPPPFMPPPPHFGMGPPR 333
Query: 1068 XXXXXXXXXXXXXFXYXGFFPPXXFXXPPLFXPPFXPP 955
Y FFPP PP F P PP
Sbjct: 334 GFMPPPHPMMFRGGPYPPFFPP----PPPHFMRPSSPP 367
Score = 30.3 bits (65), Expect = 3.1
Identities = 27/105 (25%), Positives = 29/105 (27%)
Frame = -1
Query: 995 FXXPPFFXPLXPPPXFFFXPPXXFXXPPFFFFFXPXXSPFFXXXXXXXXXXXFPPXNPXX 816
+ PP P PP P PPF FF P F PP P
Sbjct: 267 YRGPPPHHPYGPPHPMHH--PYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPP 324
Query: 815 FXXXXFFSFLXXXXFPXXXPPXFLTPPFXXXXXGGXXSPXXXPPP 681
F P F+ PP GG P PPP
Sbjct: 325 ------------PHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPP 357
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +2
Query: 620 RGGKPPXXKGKXXKXXVGXXXGGGPGXGKXXPXXXXXG---RGGLKXXGEXP 766
RGG PP G + GG PG G+ P G RGG G P
Sbjct: 1486 RGGGPPMRGGPPMRGGPPMFRGGPPGPGRGMPSPMMRGSSMRGGFPQRGGGP 1537
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 759 SPXXFNPPLPXLXXXGXXFPXPGPPPXXXP 670
SP F PPL L +P P PPP P
Sbjct: 258 SPSAFGPPLAHLPAPVAIYPTPPPPPAPAP 287
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 759 SPXXFNPPLPXLXXXGXXFPXPGPPPXXXP 670
SP F PPL L +P P PPP P
Sbjct: 618 SPSAFGPPLAHLPAPVAIYPTPPPPPAPAP 647
>U64845-3|AAC48032.2| 312|Caenorhabditis elegans Hypothetical protein
F45F2.11 protein.
Length = 312
Score = 28.7 bits (61), Expect = 9.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 1013 FFPPXFFXXPPFFXPLXPPPXFFFXPPXXFXXPP 912
F PP PP PPP FFF P F P
Sbjct: 219 FIPPRIARRPPI-----PPPQFFFPPSPHFSREP 247
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 1008 PPXXFXXPPLFXPPFXPPXXFFXPPXXFXXPP 913
PP PP+ P F PP PP PP
Sbjct: 41 PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.301 0.140 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,340,587
Number of Sequences: 27780
Number of extensions: 219178
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
- SilkBase 1999-2023 -