Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L22
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    49   8e-07
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.96 
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.9  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    26   6.8  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   9.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   9.0  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    26   9.0  

>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
 Frame = +1

Query: 469 ISYTFDFCGPSYAVDTACSSSMFALAQAVTAMRAGHCDAAIVAGTNLCLKPANSLNFHRL 648
           IS  + F   ++   TAC++   A+  A   ++ GH D  I  G+  C+ P     F + 
Sbjct: 153 ISQRYGFTALNHTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKA 212

Query: 649 SMLS------PQGRCAAFDXSGNGYVRSE-TAVVVVLSAGHARRVYATVRA 780
             LS      P+     FD + +G+V  E +A +V+    HA+   A + A
Sbjct: 213 RSLSTKFNDNPKAASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYA 263


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 221 VEVCEVFKFSIPLWQTVETWDPSSAV 144
           +++ +    S PLW   ETWDP  ++
Sbjct: 292 LQLIQCLAISYPLWSNSETWDPHRSI 317


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 85  PTISKSSPSNYSLEWISSPLTADDGSQVST 174
           PT+S +SPS   L   SSPL   +GS+ S+
Sbjct: 113 PTVSIASPSTPELPPSSSPLLPPNGSESSS 142


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 46  HST*PVCPGSCRSPTISKSSPSNYSLEWISSPLTADDG--SQVSTVCQRGMENLKTSHT 216
           HST    P +  S +++KSS  + +L  I SPL   +    ++S   Q  + N+K +H+
Sbjct: 280 HSTDHQHPKANISGSLTKSSSESKNLSTIQSPLKTSNSFFKELSPHSQITLSNVKNNHS 338


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 133 RSTPANSCSANSSILLDSGSFPDRPVKYYVNKS*GF 26
           R+ P N+ S N+S L  S   P  P   + NK+  F
Sbjct: 223 RAEPQNNGSTNASSLQSSNYLPTNPTLTHSNKAPSF 258


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 20  YREPLRFIDIVLDRSVREAAGVQQY 94
           Y + +R I + +DR  R  AGVQ Y
Sbjct: 136 YHKSVRIIPLKIDRYARLVAGVQYY 160


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/51 (19%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 157 GSQVSTVCQRGMENLKTSHTSTPRFFGVHAKQANL--MDPQLRLLLELTHE 303
           G+Q+  +C+  +E ++ S+   P++    A Q  +  +   +  L+++T++
Sbjct: 721 GNQIQDICEANLEMVEESYRPHPKYLPFPASQVRIRSVSEDMFTLVDVTND 771


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 282 KTELRVHKVCLLSVNPEESWRRSV 211
           KTE    +VCLL   P + WR  +
Sbjct: 36  KTEFYPGEVCLLKCRPAKRWRHPI 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,013
Number of Sequences: 5004
Number of extensions: 66351
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)