Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L21
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.53 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
 Frame = -2

Query: 587 SVRHGAVVPREVAALHAAAQQRPQ-RLQHRAA--------RLVRVEVA---DECDSDGPR 444
           +VR G V  RE A + AA QQ    R Q +A         RL+   V    D CD    +
Sbjct: 137 AVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDK 196

Query: 443 VVPVGVRADVQP 408
           V P+ VRA   P
Sbjct: 197 VAPILVRARETP 208


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 207  GIK--PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSG 82
            G+K  P HC     +  A I++++ + +S S    WR     +G
Sbjct: 1165 GVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNG 1208


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 160 CYFCEKRAESEREYNC 113
           C  C++R E +  Y+C
Sbjct: 274 CSLCQRRFEEQGNYSC 289


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 360 PRFLVGGNGKVYEGSGWLH 416
           P FL  G+GK Y  SG  H
Sbjct: 230 PTFLCKGDGKWYLPSGGCH 248


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -2

Query: 128 ARVQLPSGGG-PCRGAARAKHVKHAGNQNLKGFP 30
           + V +  GG   C    RA  V HA   N+ G P
Sbjct: 487 SHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLP 520


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -2

Query: 128 ARVQLPSGGG-PCRGAARAKHVKHAGNQNLKGFP 30
           + V +  GG   C    RA  V HA   N+ G P
Sbjct: 487 SHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLP 520


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -3

Query: 484 VLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRXRGS 356
           +L +P     +  ++ P         PEP Y + +PP    GS
Sbjct: 23  LLIIPSKCEAVSNDMQPLEARSADLVPEPRYIIDVPPRCPPGS 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,880
Number of Sequences: 438
Number of extensions: 4366
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)