Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L09
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.94 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +1

Query: 721 PPPXPPPRXXXXKXKXPKXGGKXPXXXXNPPXXPPXXPPXSPP 849
           P P P P       + P+ G         PP  PP  PP   P
Sbjct: 21  PGPQPSPHQ---SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 14/58 (24%), Positives = 17/58 (29%)
 Frame = +1

Query: 718 PPPPXPPPRXXXXKXKXPKXGGKXPXXXXNPPXXPPXXPPXSPPXXXTPTXXXXPXXG 891
           P    P P+    +       G  P     PP   P  PP +PP          P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP---PGGPPGAPPSQNPSQMMISPASG 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 718  PPPPXPPP 741
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 703  PXXXXPPPPXPPPR 744
            P    P PP PPPR
Sbjct: 1852 PVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,788
Number of Sequences: 438
Number of extensions: 3436
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)