Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_L05
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 0.056
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 31 0.29
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.7
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 27 3.6
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 4.8
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 27 4.8
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 6.3
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 8.4
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 26 8.4
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.1 bits (57), Expect(2) = 0.056
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 505 GRVTPVTEQQSPHTAVLPPRTTRIHNPPTTPIRPNNSTL 621
G T VTE Q+P +++ P R N +TPI+ + +
Sbjct: 236 GATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVI 274
Score = 24.6 bits (51), Expect(2) = 0.056
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 391 QLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVT 489
QL SL I+P V E DT+ V++ +K +T
Sbjct: 168 QLSYSLPQIIPVVSESMWDTKAEVKKQSKETMT 200
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +3
Query: 273 GYVPSHT----GYQPYEPPTADIYTQQSYSAPSSYQDGGYSA 386
GY P+ G Y PP + Y QQ Y+ P Y GGY A
Sbjct: 11 GYAPAPPQQAYGGPNYYPPQQN-YPQQGYAPPQGYPQGGYPA 51
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 364 IKMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAG 507
IK+ LHR R ++++P V+ D Q+ E+T + ++W G
Sbjct: 866 IKLYKVLHRYSQRDCVEVIPDVIRMFEDRLQL--ELTDIARNPSKWPG 911
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 706 CVIQYLL*VTNK*INGLYWKCLLVDLVMYRQETYQNYISMSXVHLNSSLY-PGWVXKLFG 882
C++Q L TN I ++ ++ Q Y NY+ + LN Y + K FG
Sbjct: 623 CILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFG 682
Query: 883 NL 888
N+
Sbjct: 683 NI 684
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 270 NGYVPS-HTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAP 389
N +P+ + YQ PT +YSAP S+ +SAP
Sbjct: 119 NTLLPALNDAYQACPKPTRKNGNNDTYSAPQSFNGNEFSAP 159
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 462 DHLLSIHSPLHNRWNYIQK*PEQ 394
DHL SI S + N WN +Q P +
Sbjct: 261 DHLKSIQSEVSNLWNKLQVSPNE 283
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 4.8
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +1
Query: 367 KMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQE-VTKMMVTAAEWAGRVTPVTEQ--QS 537
KM + L +QLL SLL + R+++T ++E TK+ + V VT+Q Q
Sbjct: 388 KMELLLKKQLLPSLLQLETYYFRRSIETSLELEEYYTKVSPWMSSIVDDVMYVTKQVFQR 447
Query: 538 PHTAVLPPRTTRIHNPPTTPIRPNN 612
V TR N PI N+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRND 472
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 489 CNHHFRNFLDHLLSIHSPLHNRWNYIQ 409
CN HF +F + I+ L +RW +++
Sbjct: 324 CNEHFEHFKNESGEIYGVLLHRWCFLE 350
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 508 RVTPVTEQQSPHTAVLPPRTTRIHNP 585
RV P T Q+ H+ LPP H+P
Sbjct: 563 RVLPYTRSQAFHSTSLPPSLPSGHSP 588
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +1
Query: 280 YHHTLDISHMSHQLLIFIHNNHTVHQAHI 366
++HT+ ++HM +++ I + + +H A I
Sbjct: 188 FNHTVPLTHMDYKMAYNILHEYRIHNADI 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,214
Number of Sequences: 5004
Number of extensions: 49911
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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