Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_L05
(896 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 32 0.006
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.54
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 2.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 24 2.2
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 24 2.2
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 23 3.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 8.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 8.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 8.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 8.7
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 8.7
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 32.3 bits (70), Expect = 0.006
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +1
Query: 265 NQMDMYHHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHR--QLLRSLLDIVPAVMER 438
NQ HH + +S + I + + +H A + + + +L I+P V +
Sbjct: 914 NQQHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQ 973
Query: 439 AMDTQQVVQEVTKMMVTAAEWAGRV---TPVTEQQSPHTAVLPPRT 567
+ Q Q+ + AG+ T +QQSP VLP +T
Sbjct: 974 SQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVLPGKT 1019
Score = 23.4 bits (48), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 430 MERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPH 543
++R + QQ + + M A+ G+ V QQSPH
Sbjct: 1066 LKRVVTNQQQSIQTSGMQRIIAQIGGKPIAVQIQQSPH 1103
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.8 bits (54), Expect = 0.54
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 573 YSQPAYNSYPPQQQYSNSYGKFG 641
Y PA N P + QY + YG++G
Sbjct: 1807 YDDPA-NCAPEEDQYGSQYGQYG 1828
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.8 bits (49), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 766 CLLVD---LVMYRQETYQNYISMSXVHLNSSL--YP 858
CLL + + R ETY N S+S H N+ L YP
Sbjct: 524 CLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYP 559
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.8 bits (49), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 766 CLLVD---LVMYRQETYQNYISMSXVHLNSSL--YP 858
CLL + + R ETY N S+S H N+ L YP
Sbjct: 492 CLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYP 527
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 23.8 bits (49), Expect = 2.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 775 VDLVMYRQETYQNYISMSXVHLNSS 849
+D+V +ET Q ++M +HL S
Sbjct: 342 MDMVAQNEETLQTVVAMKMMHLPQS 366
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 486 NHHFRNFLDHLLSIHSPLHNRWNYIQK*PEQLP 388
N+++ N+ ++ + PLH NYI++ P +P
Sbjct: 321 NYNYNNYNNN----YKPLHYNINYIEQIPVPVP 349
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 3.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 309 EPPTADIYTQQSYSAPSSYQDGGYSAPAAA 398
+PP A +Y SS +GG ++P +A
Sbjct: 558 KPPVATMYGSDEEIINSSNDEGGKTSPNSA 587
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 VLCSHHRVPHHHMLP 120
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 VLCSHHRVPHHHMLP 120
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 VLCSHHRVPHHHMLP 120
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 VLCSHHRVPHHHMLP 120
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 VLCSHHRVPHHHMLP 120
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 76 VLCSHHRVPHHHMLP 120
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 8.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = -2
Query: 688 VKVSYNIICPLVVQYFP 638
++++ CP+ +QYFP
Sbjct: 130 IRLTITASCPMNLQYFP 146
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 8.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = -2
Query: 688 VKVSYNIICPLVVQYFP 638
++++ CP+ +QYFP
Sbjct: 130 IRLTITASCPMNLQYFP 146
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 8.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 796 DDTSLSRQASTSNTDHLFI 740
DD LS A T+N HL +
Sbjct: 935 DDIRLSPAAYTANVSHLIV 953
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.8 bits (44), Expect = 8.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = -2
Query: 688 VKVSYNIICPLVVQYFP 638
++++ CP+ +QYFP
Sbjct: 69 IRLTITASCPMNLQYFP 85
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 747 KWSVLEVLACRLSDVSSGNLSKL 815
+WS L+V CR +SG L
Sbjct: 131 QWSKLQVFDCRYVTTTSGMFEAL 153
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,074
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 27
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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