Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L02
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   3.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.8  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   8.5  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 389 GLVQHAYDPIGASVYS*SPMVRAETXSSPNNPSSFVAYHKV 267
           GLV+  YDPIG  V+     +R    +S  N  S V    V
Sbjct: 466 GLVERFYDPIGGQVFLDGKDLRTLNVASLRNQISLVQQEPV 506


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +3

Query: 360 NRIISMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAAS 539
           N ++S+LH  KED+G+P D  L S    ++       +  LV    +L P  A       
Sbjct: 275 NDVVSVLHN-KEDSGLPCDLLLLSGSCVVNEAMLSGESTPLVKESIELRPEEAVIDVDEL 333

Query: 540 DTAGSLFTG 566
           D    LF G
Sbjct: 334 DKNAVLFGG 342


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 711  RLYALSSKLHLRRRVNDPSHRSCVVRHPT 625
            +L  +S K+H   + ND   RSC  R+PT
Sbjct: 1173 QLCLISMKIHEFSKSNDFCSRSCAERYPT 1201


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 522 AVYAASDTAGSLFTGAPDGGMVLIAGTGSNA 614
           ++YA+ DT+ S FT   D    L+    SNA
Sbjct: 23  SMYASRDTSTSSFTNPTDSSTRLLYNNASNA 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,025
Number of Sequences: 5004
Number of extensions: 64399
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)