Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_L02
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 43 4e-04
07_01_0345 + 2497910-2498114,2498311-2498458,2498551-2498742,249... 40 0.003
12_02_1268 + 27458823-27460046 31 1.3
05_04_0076 - 17697893-17697922,17698312-17698707 30 2.2
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 29 3.8
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 29 3.8
11_04_0368 + 16877080-16877496,16879424-16879708 29 5.1
03_02_0019 - 5031667-5032614 29 5.1
01_07_0089 - 40999824-41000111,41000184-41000321,41000359-410008... 29 5.1
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621 28 8.9
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 28 8.9
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 42.7 bits (96), Expect = 4e-04
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +3
Query: 420 ALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDG--GMVLI 593
A+ ++ L +SG S ++ ++DL P K Y +D +L +G G VLI
Sbjct: 90 AVRAVCLAVSGVNHPSDQQRMLDWIRDLFPGHVK-FYVENDAVAALASGTMGKLHGCVLI 148
Query: 594 AGTGSNALLRTSDGEQHNCXXXXXXXXXXXXAYWIAHKAVKSVIDDVDG 740
AGTGS A T DG+ Y IA +A+ +V+ DG
Sbjct: 149 AGTGSIAYGVTEDGKVARAAGAGPVLGDWGSGYGIAAQALTAVVKAYDG 197
>07_01_0345 +
2497910-2498114,2498311-2498458,2498551-2498742,
2498918-2499046,2499304-2499473,2499659-2499789,
2500007-2500090
Length = 352
Score = 39.9 bits (89), Expect = 0.003
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Frame = +3
Query: 240 GVEGGATHSNLVICDEAGR-------VVGRAXXLGTNHWTLGIDGCANRIISMLHEAKED 398
GV+GGA ++ + +C A V+ RA +NH ++G D + ++ +A
Sbjct: 28 GVDGGAGNT-VCVCIPAAMPFADPLPVLSRAVAGCSNHNSVGEDKARETLERVMAQALLK 86
Query: 399 AGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDG 578
A + ++ L ++G ++ ++++ P K ++ +D +L +G
Sbjct: 87 ARRRRSNVC-AVCLAVAGVNHPIDQQRMLDWLREIFPSHVK-LFVENDAVAALASGTMGK 144
Query: 579 --GMVLIAGTGSNALLRTSDGEQHNCXXXXXXXXXXXXAYWIAHKAVKSVIDDVDG 740
G VLIAGTG+ A T DG + AY I+ +A+ +V+ DG
Sbjct: 145 LHGCVLIAGTGTIAYGFTRDGREARAAGAGPVLGDWGSAYGISAQALTAVVRAYDG 200
>12_02_1268 + 27458823-27460046
Length = 407
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 336 TLGIDGCANRIISMLHEAKED--AGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDP 509
T +D C R++ LHEAKE AG D S S +S + +A V LD
Sbjct: 339 TKDVDACLERLVKALHEAKETKAAGGNDDDDESSSSSDDSDSSSDSEEQDKLAVVTKLDF 398
Query: 510 MCAKAVY 530
A+ Y
Sbjct: 399 SLAQPNY 405
>05_04_0076 - 17697893-17697922,17698312-17698707
Length = 141
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 533 GVRHGWVPIHWSTGRGHGSYSWYRFECTITYVGWRTTQL 649
G RH +V +H G HG++ WYR + G R T L
Sbjct: 10 GRRHHFVLVH---GLCHGAWCWYRVATALRRAGHRVTAL 45
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 635 RTTQLRWLGSFTRRRRWSLL 694
RTTQL+WLG F R + LL
Sbjct: 354 RTTQLKWLGGFRRLKELQLL 373
>06_01_0581 -
4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 726 RSPI--SRLYALSSKLHLRRRVNDPSHRSCVVRHPTYVIVHSN 604
R P+ SRLY+L + LR + P HRS +V H YV H +
Sbjct: 843 RKPVHGSRLYSLL--MTLRDVQSSPMHRSSLVGHENYVTRHQD 883
>11_04_0368 + 16877080-16877496,16879424-16879708
Length = 233
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 539 RHGWVPIHWSTGRGHGSYSWYRFECTITYVGWRTTQL 649
RH ++ +H G HG++ WYR ++ G R T L
Sbjct: 22 RHHFILVH---GVCHGAWCWYRVTTALSSAGHRVTAL 55
>03_02_0019 - 5031667-5032614
Length = 315
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 405 IPKDQALDSLGLTLSGCEQ--ESSNAELVARVKDLDPMCAKAVY 530
+P+DQ D L L+ + ++ A+LVA +D DP CAK V+
Sbjct: 104 LPQDQLRDLLAGALAAHPEAGRAARADLVA-ARDRDPACAKMVH 146
>01_07_0089 -
40999824-41000111,41000184-41000321,41000359-41000840,
41001532-41001601
Length = 325
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 572 GRGHGSYSWYRFECTITYVGWRTTQL 649
G GHG++ WYR + G R T L
Sbjct: 50 GLGHGAWCWYRVVAALRAAGHRATAL 75
>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
Length = 230
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 354 CANRIISMLHEAKEDAGIPKDQALDSLGLTLS 449
C+N I+ L E K+D G P +L LG ++S
Sbjct: 75 CSNVILDKLPEKKKDPGCPTITSLCDLGASIS 106
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 372 SMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPM 512
S + E K++ G K+ D L L L + + SN+EL+ VKDLD M
Sbjct: 421 SQIEELKQELGHEKNLNGD-LHLQLQ--KMQESNSELLLAVKDLDEM 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,713,818
Number of Sequences: 37544
Number of extensions: 474472
Number of successful extensions: 1342
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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