Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L02
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    75   7e-14
Z74028-1|CAA98424.1|  334|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical p...    31   1.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   6.0  

>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 74.9 bits (176), Expect = 7e-14
 Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 2/171 (1%)
 Frame = +3

Query: 234 FGGVEGGATHSNLVICDEAGRVVGRAXXLGTNHWTLGIDGCANRIISMLHEAKEDAGIPK 413
           + G+EGGAT S LVI D        +   GTN +         RI   + E  E   +  
Sbjct: 196 YAGIEGGATGSKLVIIDADTNQRYTSSTEGTNFFLTDHTIVCKRIADWILEVFEKEKLDI 255

Query: 414 DQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAP--DGGMV 587
              L +LGL LSG E E  N + V   +       +  Y  SD   +L    P  + G+V
Sbjct: 256 KN-LKALGLGLSGAEDEEFNKKFVDYFRQNHGNVTENFYLTSDAVMTLLANFPGEENGIV 314

Query: 588 LIAGTGSNALLRTSDGEQHNCXXXXXXXXXXXXAYWIAHKAVKSVIDDVDG 740
           LIAGTGS+  L+  DG                 A+WIA  A++ + D  DG
Sbjct: 315 LIAGTGSSCRLKIRDGSVKGAGGWGHQIGDGGSAFWIARTAIQMLFDAEDG 365


>Z74028-1|CAA98424.1|  334|Caenorhabditis elegans Hypothetical
           protein C14C10.1 protein.
          Length = 334

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 440 DVIRLRTRKQQCRISGQGQRFRSDVCKSGVCGVRHGWVPIHWS-TGRGHGSYSWY 601
           D+++ R +    + +G  Q F+  V + GV G+   W P     + +G G + +Y
Sbjct: 57  DIVKCRMQVDPLKYTGVVQGFKVAVAEDGVRGLARAWAPTTIGYSAQGFGKFGYY 111


>Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical
           protein T05F1.8 protein.
          Length = 393

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 440 DVIRLRTRKQQCRISGQGQRFRSDVCKSGVCGVRHGWVPIHWS-TGRGHGSYSWY 601
           D+++ R +  + +     Q F+  + + GV G+  GW P     + +G G + +Y
Sbjct: 71  DIVKCRIQVNKEKYGSMVQGFKVTIAEDGVRGLARGWAPTFIGYSAQGLGKFGFY 125


>U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical
           protein C33F10.12 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 440 DVIRLRTRKQQCRISGQGQRFRSDVCKSGVCGVRHGWVPIHWS-TGRGHGSYSWY 601
           D+++ R +  + +     Q F+  + + GV G+  GW P     + +G G + +Y
Sbjct: 71  DIVKCRIQVNKEKYGSMVQGFKVTIAEDGVRGLARGWAPTFIGYSAQGLGKFGFY 125


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 772  TLCXGYGEIRRPSTSSITDFTAL 704
            T C GY E+ +P  + IT F+AL
Sbjct: 4023 TTCTGYTEMNKPDDAEITTFSAL 4045


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,548,728
Number of Sequences: 27780
Number of extensions: 373942
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)