Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L02
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.8  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 277 ITRFECVAPPSTPPKNIVDN 218
           + RF C+ PP+  P+ I  N
Sbjct: 145 VPRFRCIGPPTPFPRFIPPN 164


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 127 LRTFYFKKTLTLLAAADRQ 71
           +R FYF   L LLA +D Q
Sbjct: 1   MRQFYFSAILFLLAISDSQ 19


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 324 TNHWTLGIDGCANRIISMLHEAKEDAGIPKDQ 419
           + H TLG+   A R I  L E +    + K+Q
Sbjct: 82  SRHTTLGLLTKAKRFIKSLEERERKHAVHKEQ 113


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 758 IWRDTETIDVIDHRFHGFM 702
           +W D  T+ ++D    GFM
Sbjct: 774 LWADAVTLAILDFHESGFM 792


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 388 ASCSMLMILLAHPSIPRVQ 332
           A   ++M+L+ HP  PR++
Sbjct: 150 AIVGIVMVLIIHPGDPRIK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,660
Number of Sequences: 438
Number of extensions: 4565
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)