Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_L01
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.91 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   8.5  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 137 PTLKETATNLLTTARTSLILPKTTTLXETATNLSTTVHITWTVPKADLTSSLPL 298
           PT++ T T ++ T  T   + +TTT+      + T +  T T P  + T+ LP+
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 342 NFXRYSLLPTASTXKRGRLEVRSALGTVHVIC 247
           NF    ++P  ST KR  + +R   G +H+IC
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLIC 787


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 122 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLXETATNLSTTVHITWTV 265
           LCW+WP  K    N L    + L ILP T    +   N +      W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,570
Number of Sequences: 5004
Number of extensions: 31163
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)