Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K23
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   192   4e-51
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   192   4e-51
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   2.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  192 bits (468), Expect = 4e-51
 Identities = 87/113 (76%), Positives = 94/113 (83%)
 Frame = +1

Query: 448 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 627
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 628 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFG 786
           TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFG
Sbjct: 128 TSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score =  123 bits (296), Expect = 3e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +3

Query: 246 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 425
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 426 VRIPKEQGSPFILAW 470
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 57.2 bits (132), Expect = 2e-10
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +2

Query: 785 GVSVQGIIIYRASYFGFYDTARGMLP 862
           GVSVQGIIIYRA+YFGFYDTARGMLP
Sbjct: 180 GVSVQGIIIYRAAYFGFYDTARGMLP 205



 Score = 27.5 bits (58), Expect = 0.17
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 646 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 780
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  192 bits (468), Expect = 4e-51
 Identities = 87/113 (76%), Positives = 94/113 (83%)
 Frame = +1

Query: 448 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 627
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 628 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFG 786
           TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFG
Sbjct: 128 TSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score =  123 bits (296), Expect = 3e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +3

Query: 246 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 425
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 426 VRIPKEQGSPFILAW 470
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 57.2 bits (132), Expect = 2e-10
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +2

Query: 785 GVSVQGIIIYRASYFGFYDTARGMLP 862
           GVSVQGIIIYRA+YFGFYDTARGMLP
Sbjct: 180 GVSVQGIIIYRAAYFGFYDTARGMLP 205



 Score = 27.5 bits (58), Expect = 0.17
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 646 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 780
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 153 SGVSVSVIPHPRVPQLPPRHIHLVKIT 233
           +G   S+I  P   +LPP H H   +T
Sbjct: 86  TGFGGSIITIPPTRKLPPLHPHTAMVT 112


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 847 PRHAADLDN 873
           PRHA+DLDN
Sbjct: 175 PRHASDLDN 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,639
Number of Sequences: 438
Number of extensions: 4715
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)