Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K22
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    29   0.67 
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    29   0.88 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   4.7  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   8.2  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
 Frame = +1

Query: 49  FXSVLTRFQDXSFHQSH*YSTPY---------SRDLRPV*LENRRRVLQKVIVRILQRLS 201
           + S+ + F+D S H S  YS  Y          + L    LE+RRR+L+KVIVR   R+S
Sbjct: 369 YGSLRSIFEDSSSHSS--YSPYYVVFDILYLNGKSLVKYSLESRRRILEKVIVRESHRMS 426


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 525 PRAATINQYVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQFPY 674
           P ++  + Y+ E+  + ++  +I   L+G I+ L +A YFKG    Q+ Y
Sbjct: 436 PPSSYEDNYILEI-EAVVDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYY 484


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +2

Query: 158 AYFKRSLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIYQVARLHP 337
           ++F ++L+  S+  A   +     H ++  ++A+  +  L     D++LQEIY+ A++  
Sbjct: 421 SFFVKTLHAISSSSAAESSIALALHMLV--INAFQSMEKLKILTFDDSLQEIYKEAQIQS 478

Query: 338 HKCFNN 355
               +N
Sbjct: 479 GTFMSN 484


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 508 RQNFDPTNTSFLHVHLEFFLHDHPLVNEQS*AFLQRPDGSFLLIP 374
           + NF+    +  H+HL  + H H   + QS  ++  P+  F   P
Sbjct: 22  KANFESIRINLQHMHLYHYEHIHLFTSSQS--YMYHPNARFSYSP 64


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 549 YVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQFPYDDTEPSAFYNHQGNQ 719
           Y+ + +  +    +  S  EGVI + I      G W+++         A Y ++GNQ
Sbjct: 103 YITDASPESQNLFLSKSKEEGVIFLCIQIKKLLGKWESKLKIIKFNKLAKYVYEGNQ 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,590
Number of Sequences: 5004
Number of extensions: 76986
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)