Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K18
         (1224 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.                34   0.91 
BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate dehydr...    34   0.91 
BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate dehydr...    34   0.91 
BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate dehydr...    34   0.91 
AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate dehydr...    34   0.91 
AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate dehydr...    34   0.91 
AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate dehy...    34   0.91 
AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate dehy...    34   0.91 

>CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQEGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


>AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 34.3 bits (75), Expect = 0.91
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 193 CAELLNXYGIPXTTXAKCSKEELLMEIPXHDALVVRSAXQVTKE 324
           C ++L   G+        SKEEL+ E+   + L+VRSA +VT +
Sbjct: 19  CRKILQEGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,515,212
Number of Sequences: 237096
Number of extensions: 1170166
Number of successful extensions: 1001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17339562450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)