Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K15
         (1219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    31   0.43 

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 774

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 25/108 (23%), Positives = 30/108 (27%), Gaps = 1/108 (0%)
 Frame = +1

Query: 775  TXPHXKXTPAPXHXXPXKKPXXKPPEXGHRXXKRPXKHRPHRANXXPXGPRPXKXNKTXP 954
            T P  K      H    K P   P   G +   +P KH  H +      PRP   N T P
Sbjct: 189  TKPDHKPWKHEEHCHHGKFPRPVP-HNGTKPDHKPWKHEEHCSCHHDKFPRPVPHNGTKP 247

Query: 955  HQPXXSHHXAXPXXLRGXEAQXPXRXXRSXHXA-ERRAXCHXEXXPPP 1095
                  H               P    +  H   +    CH    P P
Sbjct: 248  DHKPWKHEEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,934
Number of Sequences: 5004
Number of extensions: 26790
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)