Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K14
         (876 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...    97   6e-20
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...    97   6e-20
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...    97   6e-20
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...    97   6e-20
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...    91   4e-18
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...    78   4e-14
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    46   2e-04

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 97.5 bits (232), Expect = 6e-20
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = +2

Query: 230 YFGKLGMRNFHFXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 409
           YFGK+GM+++H  +N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++     
Sbjct: 52  YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111

Query: 410 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVL 514
                 PKQPVIV               VGGACVL
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 146



 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 31/75 (41%), Positives = 38/75 (50%)
 Frame = +1

Query: 76  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 255
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPG   +   + 
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FPLXKEQEFLSSFEL 300
           + L + Q F  +  L
Sbjct: 61  YHLKRNQSFCPTVNL 75


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score = 97.5 bits (232), Expect = 6e-20
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = +2

Query: 230 YFGKLGMRNFHFXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 409
           YFGK+GM+++H  +N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++     
Sbjct: 51  YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 110

Query: 410 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVL 514
                 PKQPVIV               VGGACVL
Sbjct: 111 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 145



 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 30/70 (42%), Positives = 36/70 (51%)
 Frame = +1

Query: 91  KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEKFPLXK 270
           +KTRKLRGHVS                 NAGG HHHRIN DKYHPG   +   + + L +
Sbjct: 5   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64

Query: 271 EQEFLSSFEL 300
            Q F  +  L
Sbjct: 65  NQSFCPTVNL 74


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 97.5 bits (232), Expect = 6e-20
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = +2

Query: 230 YFGKLGMRNFHFXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 409
           YFGK+GM+++H  +N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++     
Sbjct: 52  YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111

Query: 410 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVL 514
                 PKQPVIV               VGGACVL
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 146



 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 31/75 (41%), Positives = 38/75 (50%)
 Frame = +1

Query: 76  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 255
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPG   +   + 
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FPLXKEQEFLSSFEL 300
           + L + Q F  +  L
Sbjct: 61  YHLKRNQSFCPTVNL 75


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score = 97.5 bits (232), Expect = 6e-20
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = +2

Query: 230 YFGKLGMRNFHFXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 409
           YFGK+GM+++H  +N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++     
Sbjct: 52  YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111

Query: 410 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVL 514
                 PKQPVIV               VGGACVL
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 146



 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 31/75 (41%), Positives = 38/75 (50%)
 Frame = +1

Query: 76  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 255
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPG   +   + 
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FPLXKEQEFLSSFEL 300
           + L + Q F  +  L
Sbjct: 61  YHLKRNQSFCPTVNL 75


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 91.5 bits (217), Expect = 4e-18
 Identities = 42/95 (44%), Positives = 57/95 (60%)
 Frame = +2

Query: 230 YFGKLGMRNFHFXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 409
           YFGK+GM++++  +N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++     
Sbjct: 52  YFGKVGMKHYNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111

Query: 410 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVL 514
                  KQPVIV               VGGACVL
Sbjct: 112 LGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVL 146



 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 31/75 (41%), Positives = 38/75 (50%)
 Frame = +1

Query: 76  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 255
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPG   +   + 
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FPLXKEQEFLSSFEL 300
           + L + Q F  +  L
Sbjct: 61  YNLKRNQSFCPTVNL 75


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score = 78.2 bits (184), Expect = 4e-14
 Identities = 30/55 (54%), Positives = 44/55 (80%)
 Frame = +2

Query: 230 YFGKLGMRNFHFXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 394
           YFGK+GM+++H  +N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 52  YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106



 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 31/75 (41%), Positives = 38/75 (50%)
 Frame = +1

Query: 76  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 255
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPG   +   + 
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FPLXKEQEFLSSFEL 300
           + L + Q F  +  L
Sbjct: 61  YHLKRNQSFCPTVNL 75


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +2

Query: 293 LNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 394
           +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,747,949
Number of Sequences: 237096
Number of extensions: 1818611
Number of successful extensions: 3203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3183
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)