Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K13
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500...    35   0.077
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    33   0.23 
03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732...    32   0.71 
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180...    29   5.0  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    28   8.8  
10_02_0152 - 5902554-5903058,5904171-5904670                           28   8.8  

>02_04_0540 +
           23748610-23748930,23749054-23749157,23749889-23750063,
           23750149-23750212,23750867-23750946,23751128-23751287,
           23751415-23751476,23751607-23751666,23751824-23751882,
           23752194-23752275,23752691-23752740,23752847-23752980,
           23753508-23753590,23754070-23754142,23754461-23754477
          Length = 507

 Score = 35.1 bits (77), Expect = 0.077
 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 350 IDLNQISQKLETLS-SKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTED 526
           I + +++Q  E +  SK+  E ++ I   D+E   + +     +   +EV+K   Q  E+
Sbjct: 193 ISITEVTQSKEVIEFSKQIKEKMKEIDAFDLEGNTEGK-----IRATEEVDKLKEQRAEE 247

Query: 527 QKWEHMLSEWNKEKIKLMNAMIGPSQNWP 613
           Q  +H+L  +NK+++ LM ++   +Q+ P
Sbjct: 248 QA-KHLLEAFNKDRVSLMTSLQTANQSIP 275


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
 Frame = +2

Query: 308  ANDIQAHLLFGSKGIDLNQIS-QKLETLSSKRTFEPLQPIADS--DIESFLKNEKENAIL 478
            ++ IQ   L G +  D+NQI  Q    LSS++  +PL P+A    + + F     +N + 
Sbjct: 2269 SSTIQTVQLEGIRSEDMNQIGVQSNSALSSEQPTQPL-PVAPLVFNYQRFSDEPLKNELE 2327

Query: 479  SLIDEVNKNSLQTTEDQKWEHMLSEWNKEKIKL 577
             L  +   N L    +QK + +L E+N+E  KL
Sbjct: 2328 RL--KHTSNVLSKVHEQKRKQLLVEYNQEMEKL 2358


>03_02_0995 -
           13071930-13072007,13072708-13072999,13073096-13073226,
           13073564-13074466,13074545-13074631,13075141-13075224,
           13075355-13075408,13075903-13076034,13076164-13076259,
           13076508-13076777,13078711-13078800,13079942-13080008,
           13080150-13080241,13080359-13080487
          Length = 834

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 434 DIESFLKNEKENAILSLIDEVNKNSLQTTEDQKWEHMLSEWNKEKIKLMNAM 589
           D++SF     E AI+S I E  K++L++  +   + +  +W KEK   + ++
Sbjct: 89  DLKSFELKLHEMAIVSSIQEAQKDNLRSFNNYMMQVLEDDWQKEKRDFLQSL 140


>03_01_0228 +
           1802038-1803265,1804207-1804245,1804638-1804783,
           1804891-1804958,1805045-1805147,1805287-1805400
          Length = 565

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 383 TLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTE 523
           T  S+R   PL    + D+ SFL + + + +++L+D      +  TE
Sbjct: 21  TFRSRRADVPLPADPEVDVVSFLASRRHSGVVALVDAATGRRITFTE 67


>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 296 IQSGANDIQAHLLFGSKGIDLNQ---ISQKLETLSSKRTFEPLQPIADSDIESFLKNEKE 466
           I+S +ND     +  S+ ID      IS+ +ET S K   EP+   ++  I   ++ + E
Sbjct: 306 IESSSNDPGTDKIT-SEPIDTQSEKIISEPIETQSEKIISEPIDTQSEKIISEPIETQSE 364

Query: 467 NAILSLIDEVNKNSLQTTEDQKWEHMLSE 553
             I   ID  ++  +    + + E ++SE
Sbjct: 365 KIISEPIDAQSEKIISEPIEAQSEKIISE 393


>10_02_0152 - 5902554-5903058,5904171-5904670
          Length = 334

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 533 WEHMLSEWNKEKIKLMNAMIGPSQNWPRLETHS 631
           W+H+L  WN  K+K  N +I   ++  R  T +
Sbjct: 208 WDHILGYWNASKVKPDNVLILKYEDMKRNPTEN 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,177
Number of Sequences: 37544
Number of extensions: 325284
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)