Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K13
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    28   0.10 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 476 LSLIDEVN-KNSLQTTE---DQKWEHMLSEWNKEKIKLMNAMIGPSQN 607
           LS + E+N KN + TT    +Q+W     +WN E+   +  +  PS+N
Sbjct: 67  LSQLIEMNLKNQVMTTNVWVEQRWNDYKLKWNPEEYGGVEMLYVPSEN 114


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 170 LVNYFNKQNS*RLRLKVMKNCRELNV 247
           ++N+F   N  R  L V+ N   +NV
Sbjct: 340 MLNFFTTSNGFRSTLPVVSNLTAMNV 365


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 170 LVNYFNKQNS*RLRLKVMKNCRELNV 247
           ++N+F   N  R  L V+ N   +NV
Sbjct: 309 MLNFFTTSNGFRSTLPVVSNLTAMNV 334


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 170 LVNYFNKQNS*RLRLKVMKNCRELNV 247
           ++N+F   N  R  L V+ N   +NV
Sbjct: 360 MLNFFTTSNGFRSTLPVVSNLTAMNV 385


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 170 LVNYFNKQNS*RLRLKVMKNCRELNV 247
           ++N+F   N  R  L V+ N   +NV
Sbjct: 309 MLNFFTTSNGFRSTLPVVSNLTAMNV 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,955
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)