Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K12
         (1031 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   3.4  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    29   6.0  
09_02_0369 - 8012470-8013120                                           29   7.9  
07_03_0600 + 19866757-19867218,19867920-19868429                       29   7.9  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -1

Query: 653 PPPXXKXXSPPPXGFWXXXPPAQXXARXXTPXGXPXGPXP 534
           PPP  K   PPP       PP    A+   P   P GP P
Sbjct: 328 PPPPPKAAPPPPP---PKGPPPPPPAKGPPPPPPPKGPSP 364



 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 637 KXXPPPXKXFGXGXPPPKXGPXXXPP 560
           K  PPP    G   PPP  GP   PP
Sbjct: 333 KAAPPPPPPKGPPPPPPAKGPPPPPP 358



 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 637 KXXPPPXKXFGXGXPPPKXGPXXXPP 560
           K  PPP    G   PPP  GP   PP
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPP 367


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 656 RPPPXXKXXSPPPXGFWXXXPPA 588
           RPPP  +   PP  GF+   PPA
Sbjct: 198 RPPPPVQSQPPPMQGFYGGPPPA 220


>09_02_0369 - 8012470-8013120
          Length = 216

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 652 PHLXXKXXPPPXKXFGXGXPPPKXGPXXXPP 560
           PH      PPP + F    PPP   P   PP
Sbjct: 44  PHDDPPLKPPPQQQFITAQPPPPDEPPLKPP 74


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 653 PPPXXKXXSPPPXGFWXXXPPAQXXARXXTP 561
           PPP      PPP G +   PP Q   +   P
Sbjct: 18  PPPQVSGAPPPPHGHYQQQPPPQPYCQQQQP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.141    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,761,795
Number of Sequences: 37544
Number of extensions: 343518
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3036070960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)