Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_K12
         (1031 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    29   5.4  
AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical...    29   7.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   9.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   9.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   9.4  
AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical...    28   9.4  

>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 628 PPPXKXFGXGXPPPKXGPXXXP 563
           PPP   FG   PPP  GP   P
Sbjct: 57  PPPPPCFGPACPPPCFGPACVP 78


>AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.17 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = -1

Query: 653 PPPXXKXXSPPPXGFWXXXPPAQXXARXXTPXGXPXGPXP 534
           PPP      PPP  ++   P A        P   P  P P
Sbjct: 316 PPPIPPPIQPPPYSYYPVAPAAAPQVYHYAPPPPPPPPHP 355


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 658 GAPHLXXKXXPPPXKXFGXGXPPPKXGPXXXPP 560
           G+P L     PPP    G   PPP+ G    PP
Sbjct: 245 GSPPLAGSGSPPPPPAAG-SPPPPRTGSPPPPP 276


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 658 GAPHLXXKXXPPPXKXFGXGXPPPKXGPXXXPP 560
           G+P L     PPP    G   PPP+ G    PP
Sbjct: 266 GSPPLAGSGSPPPPPAAG-SPPPPRTGSPPPPP 297


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 658 GAPHLXXKXXPPPXKXFGXGXPPPKXGPXXXPP 560
           G+P L     PPP    G   PPP+ G    PP
Sbjct: 251 GSPPLAGSGSPPPPPAAG-SPPPPRTGSPPPPP 282


>AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical
           protein Y73B3A.13 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 39  LKIWTFLCSSSETXSQVKMNSKLLY 113
           +K WT  CS + T  Q   NSK+++
Sbjct: 167 IKTWTTTCSKTRTGEQFGANSKIIF 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.141    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,670
Number of Sequences: 27780
Number of extensions: 245076
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2730644118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)