Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_K08
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 357 1e-99
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 41 2e-04
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 40 4e-04
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 33 0.072
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.22
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.89
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 29 1.2
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 2.1
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 2.1
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 28 2.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.7
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 4.8
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 6.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 6.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.3
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 6.3
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 357 bits (878), Expect = 1e-99
Identities = 155/218 (71%), Positives = 193/218 (88%)
Frame = +2
Query: 152 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 331
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 332 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 511
+QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66 LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125
Query: 512 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFI 691
CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG+PNVGKSSF+
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFM 185
Query: 692 NKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTP 805
NK+TRA V+VQPYAFTTKSL+VGH DYKYLRWQVIDTP
Sbjct: 186 NKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTP 223
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +1
Query: 799 HPLESWIIHWXERNVIEMQAXTALAHLRS 885
HPLE + N IEMQ+ TA+AHLRS
Sbjct: 228 HPLE-------QMNTIEMQSITAMAHLRS 249
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 644 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTP 805
T+ GFP+VGKS+ + ++T E Y FTT + G Y + Q++D P
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLP 118
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 647 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPWNL-GSS 823
+ GFP+VGKS+ ++ IT+ Y FTT + G +Y Q++D P + G+S
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGAS 124
Query: 824 IGK 832
G+
Sbjct: 125 QGR 127
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 32.7 bits (71), Expect = 0.072
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Frame = +2
Query: 653 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG------HTDYKYLRWQVIDTPWNL 814
+ G PN GKS+ +N +T + +V Y FTT +G D+ ++++ D P +
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPGII 300
Query: 815 -GSSIGK 832
G+S GK
Sbjct: 301 KGASDGK 307
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 587 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTK 745
L Q+ + A L S D ++ + GFPN GKSS IN + + V V P TK
Sbjct: 294 LIQILRQFASLHS-DKKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETK 346
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.1 bits (62), Expect = 0.89
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 107 DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 286
+TK+ LN ++S+ FKK + A D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 287 VKYTQQNFHDRLSRI 331
++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 644 TIIICGFPNVGKSSFINKI 700
T+ + G+PNVGKSS IN +
Sbjct: 271 TVGVIGYPNVGKSSVINAL 289
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 653 ICGFPNVGKSSFINKITRA 709
I G PNVGKS+F IT++
Sbjct: 25 IVGMPNVGKSTFFRAITKS 43
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 515 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG 661
K LKR LG AT + GAN+ H P DP +T+++ G
Sbjct: 53 KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLG 98
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 572 ANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKI 700
A L LE + + A T + G+PNVGKSS IN +
Sbjct: 279 ATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINAL 321
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 158 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 274
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 274 KPTYS*YFIMLVNDCRSFPLCFR*N 200
+PTY+ YFI L++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +2
Query: 134 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 310
K++ FK IA + F+D +S R T + +++ GF +K + F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603
Query: 311 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 394
+ LS ++ + F K+DD + Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 254 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 433
+S IR R+ K + LSR I + KLD V PF +M +L D+ + + + L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492
Query: 434 NTARHLIDNV 463
T L+ NV
Sbjct: 493 ITITRLVSNV 502
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 647 IIICGFPNVGKSSFINKITRAD 712
++ICG VGKSS I+ + + D
Sbjct: 6 VVICGDQGVGKSSLISALIQED 27
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 659 GFPNVGKSSFINKITRADVEVQPYAFTT 742
G P+ GKS+ +N +T A + + FTT
Sbjct: 11 GKPSSGKSTMLNALTDATAKTGNFPFTT 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,743,331
Number of Sequences: 5004
Number of extensions: 80586
Number of successful extensions: 247
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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