Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J23
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.5  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   6.2  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   8.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   8.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   8.2  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 280  SITIEYNNLFNRKNQEKMESSWVGS-DHNDRKHDKNFTVKGIH-NLQXP 420
            S  I YN+ F +K++EK+ + W  S    D  H   FT+  +  NL+ P
Sbjct: 1392 SFLISYNDSFIKKHEEKVLTVWFESLGALDEDHAAQFTILLLQKNLKNP 1440


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 814 RGSVDRRILPHLHDRRSPVSL 752
           RG   R +LP+LH  RSP SL
Sbjct: 142 RGRKIRVMLPYLHSLRSPTSL 162


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 169 ADALVFIMVHLTEAQKKFYEXXGYIVLKXVLSEEDLCSITIEYNNLFNRKNQEKMESSWV 348
           A+ L  +M+ L +  K   +   + V K  ++  +     IE      R+N+ K+  S++
Sbjct: 249 AENLKLMMILLRDKSKNI-QFEAFHVFKLFVANPEKSEEVIE----ILRRNKSKL-ISYL 302

Query: 349 GSDHNDRKHDKNF 387
            + H DRK+D+ F
Sbjct: 303 SAFHTDRKNDEQF 315


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 451 RQSSGRSRGCNEH*EHYFPSHESSLQAPRKRSSLPNAPRLSLF 579
           +   G+SR C +  E  +P H SS  + +KR S  +     LF
Sbjct: 13  KDHGGKSRICLDSSEDTYPPHSSSPPSFQKRLSFSDFSTTRLF 55


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 524 YKPPEKGAA-YPMHQDYHYFPYEKDS 598
           Y P E  +A YP H+ Y Y+ Y + S
Sbjct: 259 YMPDESPSANYPYHEAYEYYYYIRSS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,984
Number of Sequences: 5004
Number of extensions: 65303
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)