Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   104   1e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    56   5e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    50   6e-07
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    44   3e-05
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.38 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.5  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.5  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   3.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  104 bits (250), Expect = 1e-23
 Identities = 48/86 (55%), Positives = 58/86 (67%)
 Frame = +2

Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA  G+  
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKY- 59

Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
            P     +  PGT+D V+   F   F
Sbjct: 60  VPRAVLVDLEPGTMDAVKSGKFGNLF 85


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +2

Query: 137 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 295
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +2

Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEAPXGQ 307
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   G+
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 308 VRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
              P     +  P  +D VR   +R  F
Sbjct: 61  Y-VPRSIYVDLEPNVIDQVRTGPYRDLF 87


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +2

Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 295
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 296 PXGQVRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
             G+   P     +  P  +D VR   ++  F
Sbjct: 61  GQGKF-VPRSIYVDLEPNVIDQVRTGPYKDLF 91


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 537 PPGXPPXXPXPXGGXPXSRFGXPPLFSXXXKKK 635
           PPG PP  P P G  P S+   PP      K+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 200 IISDEHGIDPTGAYHGDSDLQLERINVYYNEAP-XGQVRXPG 322
           I+  +HG+D  G + GDS  ++  +   Y++ P  G ++ PG
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSKKPTFGYLKQPG 322


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 173 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 274
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = -1

Query: 181 DLVAALTSLDMYDFPHFVLFM*TINYLTLKILLRTLHSLS 62
           D+++  TSL + + P   L+M + + L+ K +L+TLH+L+
Sbjct: 123 DILSTGTSLRLANAPTSKLYMLSESPLSTKQILQTLHALN 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,712
Number of Sequences: 5004
Number of extensions: 35393
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)