Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_J22
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 131 7e-31
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 121 6e-28
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 121 6e-28
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 121 8e-28
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 116 2e-26
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 115 5e-26
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 89 4e-18
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 89 4e-18
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 58 6e-09
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 56 3e-08
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 56 3e-08
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 54 1e-07
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 54 1e-07
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 53 3e-07
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 53 3e-07
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 53 3e-07
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 53 3e-07
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 51 1e-06
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 50 3e-06
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 50 3e-06
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 43 3e-04
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 43 3e-04
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.47
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.47
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.47
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 131 bits (316), Expect = 7e-31
Identities = 62/86 (72%), Positives = 68/86 (79%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MREIVHIQAGQCGNQIGAKFWE+ISDEHGIDPTGAY+GDSDLQLERINVYYNEA G+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + PGT+D VR F + F
Sbjct: 60 VPRACLVDLEPGTMDSVRAGPFGQLF 85
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 121 bits (292), Expect = 6e-28
Identities = 58/86 (67%), Positives = 65/86 (75%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MREIVHIQAGQCGNQIG+KFWE+ISDEHGIDP+G Y GDSDLQLERINVYYNEA +
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + PGT+D VR F + F
Sbjct: 60 VPRAVLVDLEPGTMDSVRSGPFGQLF 85
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 121 bits (292), Expect = 6e-28
Identities = 58/86 (67%), Positives = 65/86 (75%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MREIVHIQAGQCGNQIG+KFWE+ISDEHGIDP+G Y GDSDLQLERINVYYNEA +
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + PGT+D VR F + F
Sbjct: 60 VPRAVLVDLEPGTMDSVRSGPFGQLF 85
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 121 bits (291), Expect = 8e-28
Identities = 57/86 (66%), Positives = 64/86 (74%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MREIVH+QAGQCGNQIGAKFWE+ISDEHGI P G Y G+SDLQLERINVYYNEA G+
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + PGT+D VR F + F
Sbjct: 60 VPRAVLVDLEPGTMDSVRSGPFGQLF 85
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 116 bits (279), Expect = 2e-26
Identities = 54/86 (62%), Positives = 64/86 (74%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MREIVH+QAGQCGNQIG+KFWE+ISDEHGI P G + G+SDLQLERI+VYYNEA G+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + PGT+D VR F + F
Sbjct: 60 VPRAVLVDLEPGTMDSVRSGPFGQLF 85
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 115 bits (276), Expect = 5e-26
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MREIVH+QAGQCGNQIG+KFWE+ISDEHGI P G + G++DLQLERI+VYYNEA G+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + PGT+D VR F + F
Sbjct: 60 VPRAVLVDLEPGTMDSVRSGPFGQLF 85
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 89.0 bits (211), Expect = 4e-18
Identities = 41/86 (47%), Positives = 55/86 (63%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
M+EI+++Q GQCGNQIGAKFWE IS+EHG+ G Y GD+ QLERI YY E G+
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEM-EGRKY 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P ++++VR + K F
Sbjct: 60 VPRAILVDLDPESINYVRSTQYGKLF 85
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 89.0 bits (211), Expect = 4e-18
Identities = 41/86 (47%), Positives = 55/86 (63%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
M+EI+++Q GQCGNQIGAKFWE IS+EHG+ G Y GD+ QLERI YY E G+
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEM-EGRKY 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P ++++VR + K F
Sbjct: 60 VPRAILVDLDPESINYVRSTQYGKLF 85
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 58.4 bits (135), Expect = 6e-09
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEAPXGQ 307
MREIV I GQ G QIG WE+ EHGI P G D+ +E N +++E P G+
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 308 VRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D VR T+ K F
Sbjct: 61 -HVPRAIFVDLEPTVIDEVRTGTYAKLF 87
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +2
Query: 137 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL---QLERINVYYNEAPXGQ 307
RE++ I GQ G QIG WE+ EHGI P G YH + D + E IN ++ E G+
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDG-YHVEDDTYDEETETINTFFAETAGGK 66
Query: 308 VRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D VR T+R F
Sbjct: 67 -HVPRCLFVDLEPTVVDEVRTGTYRSLF 93
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/86 (32%), Positives = 41/86 (47%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G D E ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T++K F
Sbjct: 60 VPRSIFVDLEPTVVDEIRTGTYKKLF 85
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/86 (32%), Positives = 41/86 (47%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G D E ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T++K F
Sbjct: 60 VPRSIFVDLEPTVVDEIRTGTYKKLF 85
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/86 (32%), Positives = 42/86 (48%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G S + E ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T++K F
Sbjct: 60 VPRSIFVDLEPTVVDEIRTGTYKKLF 85
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/86 (32%), Positives = 42/86 (48%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G S + E ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T++K F
Sbjct: 60 VPRSIFVDLEPTVVDEIRTGTYKKLF 85
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEAPXGQ 307
MRE++ I GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 308 VRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T+R F
Sbjct: 61 -HVPRAVMVDLEPTVIDEIRTGTYRSLF 87
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 128 NKMREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEAPX 301
N+ RE++ I GQ G Q+G WE+ EHGI P G + + L + + N +++E
Sbjct: 4 NRSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMA 63
Query: 302 GQVRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
G+ P + P +D +R T++ F
Sbjct: 64 GK-HVPRAIMVDLEPTPIDEIRTGTYKTLF 92
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEAPXGQ 307
MRE++ I GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 308 VRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T+R F
Sbjct: 61 -HVPRAVMVDLEPTVIDEIRTGTYRSLF 87
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEAPXGQ 307
MRE++ I GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 308 VRXPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T+R F
Sbjct: 61 -HVPRAVMVDLEPTVIDEIRTGTYRSLF 87
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 137 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEAPXGQV 310
RE++ I GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR- 59
Query: 311 RXPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R T+R F
Sbjct: 60 HVPRAVMVDLEPTVIDEIRTGTYRSLF 86
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G + + ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R ++K F
Sbjct: 60 VPRSIFVDLEPTVVDEIRTGNYKKLF 85
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G + + ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRY- 59
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R ++K F
Sbjct: 60 VPRSIFVDLEPTVVDEIRTGNYKKLF 85
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 46.0 bits (104), Expect = 4e-05
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +2
Query: 134 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAPXGQVR 313
MRE++ I GQ G QIG WE+ EHGI P G + D + ++++ G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGT-SMEPDGNSGSLGTFFSDTGYGR-H 58
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P +D +R ++K F
Sbjct: 59 VPRSIFVDLEPTVVDEIRTGAYKKLF 84
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 137 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG-AYHGDSDLQLERINVYYNEAPXGQVR 313
RE V I GQ G QIG WE+ EHG+D G + + + + + +++E+ G+
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGK-H 64
Query: 314 XPGXSSXNWXPGTLDFVRXXTFRKXF 391
P + P LD +R + F
Sbjct: 65 VPRAIYVDLEPTVLDEIRNGVYGNLF 90
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 143 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 286
++ + GQCGNQ+ FW+ + DEHGI+ G + D+ ++ ++Y
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY 54
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 143 IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 286
++ + GQCGNQ+ FW+ + DEHGI+ G + D+ ++ ++Y
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY 54
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +3
Query: 537 PPGXPPXXPXPXGGXPXSRFG--XPPLFSXXXKKKTXXXKXKXXFXXXPPPPKXLXPPXX 710
P G PP P P G P + G PP + PPPP PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 711 KXXXXPP 731
+ PP
Sbjct: 293 RAGSPPP 299
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +3
Query: 537 PPGXPPXXPXPXGGXPXSRFG--XPPLFSXXXKKKTXXXKXKXXFXXXPPPPKXLXPPXX 710
P G PP P P G P + G PP + PPPP PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 711 KXXXXPP 731
+ PP
Sbjct: 314 RAGSPPP 320
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +3
Query: 537 PPGXPPXXPXPXGGXPXSRFG--XPPLFSXXXKKKTXXXKXKXXFXXXPPPPKXLXPPXX 710
P G PP P P G P + G PP + PPPP PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 711 KXXXXPP 731
+ PP
Sbjct: 299 RAGSPPP 305
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 543 GXPPXXPXPXGGXPXSRFGXPP 608
G PP P P GG P FG PP
Sbjct: 332 GAPPQGP-PQGGPPQGSFGAPP 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,598
Number of Sequences: 27780
Number of extensions: 284993
Number of successful extensions: 607
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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