Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_J21
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.54
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.71
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 1.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 1.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 1.6
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 2.9
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 27 5.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 5.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 833 PPPPPPPXXXKKXKXK 786
PPPPPPP KK K K
Sbjct: 24 PPPPPPPGYVKKRKNK 39
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 381 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 265
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 149 LKTPLR*WKTL-TQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 325
+ TP+ T+ T ET T + T + +TTT+ + T + T T P + T+
Sbjct: 91 MTTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTT 150
Query: 326 SLPLS 340
LP++
Sbjct: 151 ILPMA 155
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 194 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSL 343
A+ L +++ T+ + P +T ET ++ S+ T T+ + TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 241 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 345
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 833 PPPPPPP 813
PPPPPPP
Sbjct: 762 PPPPPPP 768
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 839 KXPPPPPP 816
K PPPPPP
Sbjct: 730 KSPPPPPP 737
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 166 VVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 333
++EN + + + P + PK PN N +P NG + PP Y KPT
Sbjct: 23 MLENEEEASHSQLFTPCPVPPSFPKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/59 (22%), Positives = 25/59 (42%)
Frame = +1
Query: 160 VKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 336
V+++++ S + + + +P N + N N +P D PP +PTP
Sbjct: 126 VRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTP 184
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 839 KXPPPPPPPXXXKKXK 792
K PPPPPPP + K
Sbjct: 309 KRPPPPPPPSRRNRGK 324
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 267 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 374
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,039
Number of Sequences: 5004
Number of extensions: 41202
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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