Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J18
         (1155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    34   0.043
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.17 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.30 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.40 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.70 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.9  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 22/55 (40%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -1

Query: 672 GEPQXXGXSTXGWGFGWAXGXGXVG-RGEXGXRGXXXGRRXXGRG*GXLGGPGXG 511
           G P     ST   G G   G G  G RG  G RG   G R  GRG    G P  G
Sbjct: 433 GRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 325 GXXVRLDVGIXRTGSGCEXDRAGSXSXGGMPG 230
           G   RLD    RTG G    R G    GG  G
Sbjct: 433 GRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGG 464


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 46/195 (23%), Positives = 59/195 (30%), Gaps = 2/195 (1%)
 Frame = +2

Query: 149  LNGPTCGNPQXKYLVATTXXPMSXGSXARHAAXGPRSRSVXLAPTPCTXYADIQPXXLXP 328
            L+ PT   P+     A    P+S    A  A   P  +    AP      AD  P  +  
Sbjct: 979  LSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPS 1038

Query: 329  LSAXPXXPT*XP--PKXTXXPXXXPXSTPPPXXXXLFYLPXMLGLPAPIXPXGXGQXPXS 502
             +     PT  P  PK +      P   P P    +  +P   G P    P G    P  
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP-SSEIPSIPAPSGAPPVPAPSGIPPVP-K 1096

Query: 503  PXXXXXXXXXXXXXXXXXLRPXXXPLXPXSPRPTXPXPXAXPNPHPXVXXPXX*GSPPXX 682
            P                   P   P  P  P    P P   P+  P V  P    +PP  
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVP-KPSVAAP-PVPVPSGAPPVPKPSV-AAPPVP 1153

Query: 683  XXSETPXTXTPTLXA 727
              S  P    P++ A
Sbjct: 1154 APSGAPPVPKPSVAA 1168


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +2

Query: 233 RHAAXGPRSRSVXLAPTPCTXYADIQPXXLXP--LSAXPXXPT*XPPKXTXXPXXXPXST 406
           RH      S +   AP P T  ++++P    P   S  P  P   PP  +  P   P S 
Sbjct: 113 RHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP-PIPSSL 171

Query: 407 PPP 415
           PPP
Sbjct: 172 PPP 174


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -1

Query: 654 GXSTXGWGFGWAXGXGXVGRGEXGXRGXXXGRRXXGRG*--GXLGGPGXGXXGLXG 493
           G S  G G G+  G G  G G  G RG   G    GRG   G  GG G    G  G
Sbjct: 12  GGSRGGRG-GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = -1

Query: 633 GFGWAXGXGXVGRGEXGXRGXXXGRRXXGRG*GXL-GGPGXGXXGLXGXCPXPXGLMG 463
           GFG   G G  G    G  G   G      G G   GGPG    GL G    P G  G
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
 Frame = -1

Query: 633 GFGWAXGXGXVGRGEXGXRGXXXGRRXXGRG*GXLG-GPGXGXXGLXGXCPXPXGLMG 463
           GFG   G    G G  G  G   G      G G  G GPG    G  G    P G  G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +3

Query: 231 PGMPPXDXDPALSFSHPLPVRXMPTSSLTXXPRCRPXPTXPHKXHPNXPPXRXXPXXPP 407
           P   P +  P+LS   P P+      +++  P   P P  P   +P        P  PP
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 279 PLPVRXMPTSSLTXXPRCRPXPTXPHKXHPNXPPXRXXPXXPPPPP 416
           P P   +PT +    P   P P       P  PP       PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +3

Query: 258  PALSFSHPLPVRXMPTSSLTXXPRCRPXPTXPHKXHPNXPPXRXXPXXPPPPP 416
            PA   S P PVR    +         P P       P+ PP    P   PPPP
Sbjct: 1683 PAHPVSTP-PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +3

Query: 336 PXPTXPHKXHPNXPPXR--XXPXXPPPP 413
           P PT   K HP  PP R    P  PP P
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,821
Number of Sequences: 5004
Number of extensions: 28264
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 617576420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)