Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J13
         (977 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.75 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 21/80 (26%), Positives = 21/80 (26%)
 Frame = +1

Query: 667  PXXXPPXXXXPXXPXPXXXXPXKXVPXFXPXXGKXXGXFXXXPPPGXXXPXPXXXXXXPP 846
            P    P    P  P P    P    P   P   K        PPP    P P      PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 847  XXGGXFXKTPPXXXPXXXXP 906
                   K PP   P    P
Sbjct: 1229 VP-VPTAKAPPVPAPSSEAP 1247



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 19/76 (25%), Positives = 19/76 (25%)
 Frame = +1

Query: 679  PPXXXXPXXPXPXXXXPXKXVPXFXPXXGKXXGXFXXXPPPGXXXPXPXXXXXXPPXXGG 858
            P     P  P P    P   VP   P   K        P P    P P      PP    
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-A 1173

Query: 859  XFXKTPPXXXPXXXXP 906
                 PP   P    P
Sbjct: 1174 PSSGIPPVPKPAAGVP 1189


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 23/77 (29%), Positives = 23/77 (29%)
 Frame = -3

Query: 894 GGGXXGGGFXKXPPXXGGXXXXXPGXGXXPPXGGXXXKXAXPFXXXGXKGGXXFXRXXXX 715
           G G  GGG    PP  GG        G     GG       P    G  GG         
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPGGF 247

Query: 714 GXGXXGXGXXXGXXPGG 664
           G G  G G   G   GG
Sbjct: 248 GGGLGGFGGGPGGFGGG 264


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 815 PXPGXXXXXPPXXGGXXXKPPPXXPPPXXXXXXGKXXFXXPP 940
           P  G     PP  G     PPP  PPP      G   +   P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +2

Query: 794 PPXGGXXPXPGXXXXXPPXXGGXXXKPPPXXPPPXXXXXXGKXXFXXPPP 943
           PP     P P       P        PPP  PPP      G      PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP-PPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,327
Number of Sequences: 5004
Number of extensions: 33900
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)