Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J04
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.85 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   1.1  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    28   1.5  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   1.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   3.4  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    26   6.0  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 534 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 376
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = -2

Query: 585 CRCATTR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 430
           CR ATT   P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 429 *VCAPTCSQPEPSY 388
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 697 YAVIMLRVLDGVHVLQPLRPASYLV-VELPAGALRGN 590
           YAV +L +LD +HV+   + ASY++ ++   G+++G+
Sbjct: 86  YAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 487 LVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQEXRVRCPSIARP 329
           L+  +  D  D DGP+V+PV  RA   PA      ++TS  +  V  P++  P
Sbjct: 36  LIEEDDEDTEDDDGPQVLPVH-RAP-SPAAFRKRGSITSMDQYLVNMPAVPSP 86


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 27/115 (23%), Positives = 48/115 (41%)
 Frame = -2

Query: 603 LSEAMSCRCATTR*SPARWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*V 424
           +S+A S   +++R S +    S+P RS+ R  +S   + S V+  P  + P+   + P  
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTRSAFRPKTS-ETVSSEVVSSPPTS-PLHSPVKPVS 367

Query: 423 CAPTCSQPEPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAASVRPAEGCD 259
                   E   ++P+P  +   S  PVL G  +    +       + RP    D
Sbjct: 368 NEQVEQVTEVELSIPVPSIQEAESQKPVLTGSSMRRPSVTSPTFEVAARPLTSMD 422


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 27/133 (20%), Positives = 50/133 (37%)
 Frame = -1

Query: 697 YAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHAAAQQR 518
           Y  ++L + DG  +   +   +Y   +L    +     ++R+   +  +   +H     +
Sbjct: 205 YYYLVLELADGGELFHQIVRLTYFSEDLSRHVITQVAHAIRY---LHEDCGVVHRDI--K 259

Query: 517 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQEXRVRCPSI 338
           P+ L   +   V   V      D P  V  G       AG +  + +      +V   S 
Sbjct: 260 PENLLFDSIDFVPSRVRKYRAGDDPDKVDEGEFIPGVGAGTIGRIRLADFGLSKVVWDSH 319

Query: 337 ARPPCGWSGYSAP 299
            + PCG  GY+AP
Sbjct: 320 TQTPCGTMGYTAP 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,416
Number of Sequences: 5004
Number of extensions: 61207
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)