Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J03
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   177   2e-45
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   132   9e-32
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.7  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    27   3.7  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   4.8  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   8.5  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   8.5  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  177 bits (430), Expect = 2e-45
 Identities = 86/204 (42%), Positives = 123/204 (60%)
 Frame = +1

Query: 280 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 459
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 460 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 639
           + EYAPI+G  ++     KLA+G+    IK+R   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 640 KEIWLPTPTWGNHPQICNTLNLPHKKYRXFDPKTNGFDLQGALEDISKXPKXPLFCCTRA 819
           K I++  PTWGNH  + +   L  K Y+ +DP T G D++G L D++  P   +      
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217

Query: 820 HTXPXVLTPKPSDWEQLSXVIKER 891
              P  + P  + W+ +   ++++
Sbjct: 218 AHNPTGVDPTKAQWDDILKTMQKK 241


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  132 bits (318), Expect = 9e-32
 Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 3/206 (1%)
 Frame = +1

Query: 286 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 462
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 463 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 636
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 637 AKEIWLPTPTWGNHPQICNTLNLPHKKYRXFDPKTNGFDLQGALEDISKXPKXPLFCCTR 816
              +++  PTW  H  +   L +    Y  +D K   FD +G L  I   P+  +F    
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187

Query: 817 AHTXPXVLTPKPSDWEQLSXVIKERK 894
               P  + P    W  +   +  RK
Sbjct: 188 CAHNPTGIDPTREQWLSIFESLLSRK 213


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 459 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 370
           ESST   ++ L+    NKWF +     +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +3

Query: 663 YLGKPPANLQHPQLAAQEIPLXRSQDQWFRFAGSTRGY--IKNXEGSIILLHACAHXPPG 836
           YL   P+N    QL    +P   ++DQ+++   ST  Y   +N  G    LH       G
Sbjct: 117 YLMLFPSNFDLTQLKLFRLPDFNNKDQFWKEEWSTEQYEIAENPSGYASALHTLTQLDDG 176

Query: 837 VDPQAQRLGT 866
            +  A  + T
Sbjct: 177 SETNAINVST 186


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 723 TVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 610
           T  L++ + G+   RV S   RR P +LC S++  + L
Sbjct: 81  TGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 438 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 331
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 438 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 331
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,200
Number of Sequences: 5004
Number of extensions: 76587
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)