Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J02
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    30   0.39 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    29   1.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   6.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   6.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.3  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.4  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = +3

Query: 243 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQP 422
           + +  P+AP      + P  +D   L P  +  R V N   + + I  SH      +DQ 
Sbjct: 83  EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136

Query: 423 IESHRNTRDLRFLYPRGKLPVPTLPPFNPKPI 518
            +   NT ++          +PT P  NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 537 RYRRHASEDQEELRQYNEHFLIPRDIF 617
           RY+R ASE  E L +++ HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 288  ILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLYP 467
            +LPS + D  L      +R   +   N  S++H     +I     +  HR     + + P
Sbjct: 2310 VLPSDLRDELLFQEAVQMRLFDHATRNNNSVDHEVEMEEIDQGGTVSEHRE----KSVKP 2365

Query: 468  RGKLPVPTL 494
              K+PVP L
Sbjct: 2366 VKKIPVPNL 2374


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 382 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 248
           S + SLFS       R   RF        F G++GW  +LG+    S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 351 TNPENNEA-SIEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFN 506
           TN   NE  S    H T+ +G D+ + +         +YP  K+   TLP  N
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVN 498


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 179 ANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRPSD 289
           A+    N+ S+ ++   A A+SR +CS C K ++  D
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCD 353


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 488  WNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM*MFNGRLVIFWI 354
            W +     + K  +P V++A     KSN N +  ++ G   + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +1

Query: 316 SSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQRF 495
           SSI    +     I + T R ++I ++ L ++LTS S     + T     L G  LF   
Sbjct: 326 SSISFAALTLFGLIPEFTNRRMDIALVGLAINLTSGSLIAFAKPT--HAQLAGYWLF--- 380

Query: 496 LRLTPSQYILIWETVTDDMRRRIKK 570
             ++P  YI I   ++ +     KK
Sbjct: 381 -GISPIPYICILSCISSNSAGHTKK 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,820
Number of Sequences: 5004
Number of extensions: 76060
Number of successful extensions: 247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)