Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_J02
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.4
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 29 4.5
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 29 6.0
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 29 6.0
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 29 6.0
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 29 6.0
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 29 6.0
AF016661-2|AAB66051.1| 246|Caenorhabditis elegans Hypothetical ... 28 7.9
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 140 SCQRFIQPTFSATANTAPDNTYSATSWPGTAMAVS 244
S F+ PT S TA T P +T A S +AMA S
Sbjct: 463 STPSFLSPTDSLTATTPPGSTTQAASTTESAMASS 497
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 803 IXYYHVNNTYEYLHYLNETAT 741
I YY VNN Y+HY+N T
Sbjct: 287 IRYYEVNNDAPYVHYINTYTT 307
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 803 IXYYHVNNTYEYLHYLNETAT 741
I YY VNN Y+HY+N T
Sbjct: 287 IRYYEVNNDAPYVHYINTYTT 307
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 803 IXYYHVNNTYEYLHYLNETAT 741
I YY VNN Y+HY+N T
Sbjct: 287 IRYYEVNNDAPYVHYINTYTT 307
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 803 IXYYHVNNTYEYLHYLNETAT 741
I YY VNN Y+HY+N T
Sbjct: 287 IRYYEVNNDAPYVHYINTYTT 307
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 348 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 214
H EH +D+ +R+ + S L +H E C I V QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 348 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 214
H EH +D+ +R+ + S L +H E C I V QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 28.7 bits (61), Expect = 6.0
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +3
Query: 252 NVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIES 431
N+ +PS HP PS + RR RS +PE+ E+ E S T++ G ++
Sbjct: 91 NLDMSPSRR-HPGRPSSSATISNSARRRRYRSCNSPEHLES--ESSQLTLESGSEEFRSL 147
Query: 432 HRNTRDLR---FLYPRGKLP---VPTLPPFNPKPIYI 524
R R L F P + +P FN P YI
Sbjct: 148 PRYIRQLNQRDFGSPSNSITNGYIPDSVDFNSLPRYI 184
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 348 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 214
H EH +D+ +R+ + S L +H E C I V QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 348 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 214
H EH +D+ +R+ + S L +H E C I V QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>AF016661-2|AAB66051.1| 246|Caenorhabditis elegans Hypothetical
protein F02E11.3 protein.
Length = 246
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 531 GNRYRRHASEDQEELRQYNEH--FLIPRDIFQE 623
G YR H D EEL + +EH +L DI+ E
Sbjct: 29 GTTYRSHRHADYEELSELSEHDVYLDDSDIYAE 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,734,555
Number of Sequences: 27780
Number of extensions: 436773
Number of successful extensions: 1415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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