Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J02
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              28   0.13 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              28   0.13 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   2.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.8  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.8  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 561 DQEELRQYNEHFLIPRDIFQE*GKFXKQKISECTPIFIES*LLK 692
           + E+ ++YNE  L   +I  E G F +  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 561 DQEELRQYNEHFLIPRDIFQE*GKFXKQKISECTPIFIES*LLK 692
           + E+ ++YNE  L   +I  E G F +  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 715 NY*KYHLNLSNYDSMNIGVHSEIFCXWNFP 626
           NY K + N+ N + + + V   I+C  NFP
Sbjct: 348 NYKKLYYNIINIEQIPVPVPVPIYCG-NFP 376


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 269 KYRRPSDSSFENRRRAARSK 328
           KYR  S   F +RR   RSK
Sbjct: 291 KYRETSKERFRDRRERERSK 310


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 251 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQS 358
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -1

Query: 676 SMNIGVHSEI--FCXWNFPYSWKISLGIRKCSLY 581
           S  IG+ + +  F   N+PY W++ L   K   Y
Sbjct: 70  SRQIGIANTLIPFMQQNYPYEWQLILRRYKIMKY 103


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 667 IGVHSEIFCXWNFPYSWK 614
           I  H +    WN+ Y WK
Sbjct: 617 INPHQQHLDQWNWVYEWK 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,650
Number of Sequences: 438
Number of extensions: 5990
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)