Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_J01
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   105   7e-25
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  105 bits (251), Expect = 7e-25
 Identities = 56/156 (35%), Positives = 79/156 (50%)
 Frame = +2

Query: 209 ALTTFLAAQCAIAGDHLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLL 388
           AL  F  A   + G+      ++   + D +YDFI             RLSE+S+WKVLL
Sbjct: 40  ALLNFFVATSPVIGEPCQRVHSSR--IPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLL 97

Query: 389 VEAGGNPTLATEIPQPYYSNMXTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSI 568
           +EAG +     EIP      +    DW Y+T  +  AC +     C WPRGK LGG++  
Sbjct: 98  LEAGPDEPAGAEIPSNLQLYLGGDLDWKYYTTNESHACLS-TGGSCYWPRGKNLGGTTLH 156

Query: 569 NLMFYVRGNKADYDXWAADGNEXWSFXEVLPYFXXS 676
           + M Y RG++ DY+ W   G   WS+ EV+PY+  S
Sbjct: 157 HGMAYHRGHRKDYERWVQQGAFGWSWDEVMPYYLKS 192


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 318 SELVPPDRLSPIVLAKYL 371
           +E++PP  L+  +L KYL
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,923
Number of Sequences: 438
Number of extensions: 3676
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)