Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_I22
(1211 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 33 0.60
01_01_0715 - 5542648-5543219,5543352-5543544 32 1.0
04_03_0904 + 20717005-20718087 30 3.2
01_01_0570 - 4231100-4232560 30 3.2
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 29 5.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.6
07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404... 29 7.4
06_01_0486 - 3455030-3455770 29 7.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 9.7
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 32.7 bits (71), Expect = 0.60
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 419 GHPXPPPTTVXXXAPXXRPHLXPPXEXXAWRXXXPXLXXPPVGXPGXRXXPPXP 580
G P PPP V P P PP A P + PPVG G + PP P
Sbjct: 263 GPPRPPPPQV----PPPPPQAPPPPPPNAPMGMPPRIPPPPVG--GTQPPPPPP 310
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 425 PXPPPTTVXXXAPXXRPHLXPPXEXXAWRXXXPXLXXPPVGXPGXRXXPPXP 580
P PPP AP RP PP P PPV P PP P
Sbjct: 143 PSPPPPPTVPAAPTPRPSPPPPAAGTNGTARAP---SPPVPAPAPAGSPPPP 191
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.3 bits (65), Expect = 3.2
Identities = 26/101 (25%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Frame = +2
Query: 275 TXXKXPRPXXLXXQXPYPXXXPXFTLPTPTXPXXXXXXXXXPLRYAXXGHPXP-PPTTVX 451
T P+P P P P PTPT P P Y P P PP+
Sbjct: 145 TYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYT----PTPTPPSYKP 200
Query: 452 XXAPXXRPHLXPPXEXXAWRXXXPXLXXPPVGXPGXRXXPP 574
P P+ P P PP P + PP
Sbjct: 201 QPKPTPTPYTPTPTPPS--YKPQPKPNPPPTYKPQPKPNPP 239
>01_01_0570 - 4231100-4232560
Length = 486
Score = 30.3 bits (65), Expect = 3.2
Identities = 26/91 (28%), Positives = 27/91 (29%)
Frame = -3
Query: 591 GPYXGLGGXXRXPGXPTGGXCRXGXXXRHAXXSXGGXRXGRXXGAXXXTVVGGGXGCPXX 412
G G GG G GG G + GG R G GA GGG G
Sbjct: 106 GGMGGSGGFGGGGGGGVGGGVGAGFGSGGGVGAGGGLRGGGGVGAGGGGGFGGGAGGGGG 165
Query: 411 A*RXGXXXXXXXXXGXVGVGXVXLGXXXGXG 319
G G VG G G G G
Sbjct: 166 IGAGGGFGGGAGAGGGVGGGGRFGGGGMGGG 196
>08_02_1204 - 25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 29.5 bits (63), Expect = 5.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 1211 PPPPPXPRXXXXGCG 1167
PPPPP PR GCG
Sbjct: 96 PPPPPPPRCQVEGCG 110
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +2
Query: 422 HPXPPPTTVXXXAPXXRPHLXPPXEXXAWRXXXPXLXXPPVGXPGXRXXPPXP 580
HP PP P P+ PP + A+ P PP PP P
Sbjct: 10 HPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGP 62
>07_03_1713 +
28939446-28939574,28939674-28940231,28940338-28940460,
28940676-28940912
Length = 348
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = +2
Query: 398 PLRYAXXGHPXPPPTTVXXXAPXXRPHLXPPXEXXAWRXXXPXLXXPPVGXPG 556
P Y +P PPP P PP + PPVG PG
Sbjct: 129 PPAYGHQAYPPPPPNREPGHGYHPAPAFYPPQPPPSHDEPGYGYRPPPVGPPG 181
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = +2
Query: 290 PRPXXLXXQXPYPXXXPXFTLPTPTXPXXXXXXXXXPLRYAXXGHPXPPPTTVXXXAPXX 469
PRP P P +P PT P Y P PP V P
Sbjct: 84 PRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPS 143
Query: 470 RPHLXPPXEXXA 505
P PP A
Sbjct: 144 PPPYVPPPSPPA 155
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 9.7
Identities = 21/81 (25%), Positives = 22/81 (27%)
Frame = +2
Query: 338 PXFTLPTPTXPXXXXXXXXXPLRYAXXGHPXPPPTTVXXXAPXXRPHLXPPXEXXAWRXX 517
P F+ P P P YA P PPP P PP
Sbjct: 559 PAFSPPPPPPPPPPPPLPQS--NYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRS 616
Query: 518 XPXLXXPPVGXPGXRXXPPXP 580
P PP P PP P
Sbjct: 617 VPPPPPPPPPLPNHSVLPPPP 637
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,546,363
Number of Sequences: 37544
Number of extensions: 272602
Number of successful extensions: 2351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2300
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3713048988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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