Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_I22
         (1211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    35   0.10 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    34   0.18 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   8.7  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 35.1 bits (77), Expect = 0.10
 Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 4/109 (3%)
 Frame = +1

Query: 421 APXXPSNHSXXXRXXTAAXPXTTRRXXGMAXPPAXSAXSTGGXPRXAXXAPQXXVGXXXX 600
           AP     H+   +      P  +      A PP          P  A  APQ   G    
Sbjct: 350 APPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGY 409

Query: 601 GXXXASLXXVPXRXXXXXGVPG----PPPGXPXXXGGPXXXXXXXHLPP 735
           G         P       G PG    PPPG P   G P         PP
Sbjct: 410 GPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 29/109 (26%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
 Frame = +2

Query: 275  TXXKXPRPXXLXXQXPYPXXXPXFTLPTPTXPXXXXXXXXXPLRYAXXGHPXPPPTTVXX 454
            T  K P    L    P P   P   LP P  P         PL  A  GH       +  
Sbjct: 1364 TMSKAPTGVPLPVPPPPPLFSPSMILPPPPPPLPSEEKKN-PLPTANNGHTDNGSDDIDR 1422

Query: 455  XAPXXRPH----LXPPX---EXXAWRXXXPXLXXPPVGXPGXRXXPPXP 580
              P         + PP       +WR   P    PP+G    R  PP P
Sbjct: 1423 NVPTPPSQNQYSMPPPVMGGHEGSWRGGPPMRGMPPLGMMRGRGGPPPP 1471


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
 Frame = +2

Query: 320 PYPXXXPXFT-LPTPTXPXXXXXXXXXPLRYAXXGHPXPPPTTVXXXAPXXRPHLXPPXE 496
           P P   P  T +P P  P         P   +    P PPP       P   P + PP  
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321

Query: 497 XXAWRXXXPXL-XXPPVGXPGXR---XXPPXP 580
               R   P +   PP   PG R     PP P
Sbjct: 322 PS--RFGPPGMGGMPPPPPPGMRYPGGMPPPP 351



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
 Frame = +1

Query: 631 PXRXXXXXGVPGPPPGXPXXXGGPXXXXXXXHLPPCPXXXXRXGWRXEPXXXXHAAQPXX 810
           P R     G+PG PP  P    GP         PP P      G    P     +A P  
Sbjct: 304 PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP-PPPPGMRYPGGMPPPPPPRYPSAGPGM 362

Query: 811 XXXGAXRR--AQXSXHTSXPPXP 873
                  R  A  S H   PP P
Sbjct: 363 YPPPPPSRPPAPPSGHGMIPPPP 385


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
 Frame = +2

Query: 320 PYPXXXPXFT-LPTPTXPXXXXXXXXXPLRYAXXGHPXPPPTTVXXXAPXXRPHLXPPXE 496
           P P   P  T +P P  P         P   +    P PPP       P   P + PP  
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331

Query: 497 XXAWRXXXPXL-XXPPVGXPGXR---XXPPXP 580
               R   P +   PP   PG R     PP P
Sbjct: 332 PS--RFGPPGMGGMPPPPPPGMRYPGGMPPPP 361



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
 Frame = +1

Query: 631 PXRXXXXXGVPGPPPGXPXXXGGPXXXXXXXHLPPCPXXXXRXGWRXEPXXXXHAAQPXX 810
           P R     G+PG PP  P    GP         PP P      G    P     +A P  
Sbjct: 314 PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP-PPPPGMRYPGGMPPPPPPRYPSAGPGM 372

Query: 811 XXXGAXRR--AQXSXHTSXPPXP 873
                  R  A  S H   PP P
Sbjct: 373 YPPPPPSRPPAPPSGHGMIPPPP 395


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 655 GVPGPPPGXPXXXGGPXXXXXXXHLPP 735
           G P PPPG P   GGP        LPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPP 737


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 655 GVPGPPPGXPXXXGGPXXXXXXXHLPP 735
           G P PPPG P   GGP        LPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPP 737


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 655 GVPGPPPGXPXXXGGPXXXXXXXHLPP 735
           G P PPPG P   GGP        LPP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPP 320


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/57 (28%), Positives = 17/57 (29%)
 Frame = +2

Query: 320 PYPXXXPXFTLPTPTXPXXXXXXXXXPLRYAXXGHPXPPPTTVXXXAPXXRPHLXPP 490
           P P   P   +P P  P         P        P PPP       P   PH  PP
Sbjct: 97  PPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPP--PHYPPP 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,962
Number of Sequences: 27780
Number of extensions: 163113
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3339026560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)