Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_I17
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   3.8  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -3

Query: 252  VSTAGAALMTASRTL*PIFSRSLKKLPGAAETEAVAKTIANTKTKIFENFILYFREIETQ 73
            V T+     TAS+ + P F  S+    G  ETE + + +   K K   + +  +RE   Q
Sbjct: 1580 VPTSPLKAPTASQLIIPNFDGSITNYSGEEETEWLQEEVNIMKIKELTSTVNKYRE---Q 1636

Query: 72   RTSCNELNQNLKDSL 28
                  LN++ + SL
Sbjct: 1637 LAMVQSLNEHAESSL 1651


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = -1

Query: 512 PXXPPPXXEXP--PPPPP 465
           P  PPP  E P  PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 173 GNFFKDLEKMGQRVRDAVI 229
           GNF KDL ++G+ + D++I
Sbjct: 253 GNFVKDLSQLGRNLEDSII 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,508
Number of Sequences: 5004
Number of extensions: 21936
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)