Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_I09
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...   105   7e-24
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    63   5e-11
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    52   8e-08
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    29   1.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   6.4  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   6.4  

>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score =  105 bits (253), Expect = 7e-24
 Identities = 48/108 (44%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
 Frame = +1

Query: 169 EDELTLPRASINKMIKELVPSVRVAF--ESRELILNCCTEFIHLISSEANEVCNQSNKKT 342
           +DEL+LP+A++ KM+ +++P V + F  E+R+L++ CC EFIHL+SSEANE+C +  KKT
Sbjct: 7   DDELSLPKATVQKMVSDILP-VDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKT 65

Query: 343 INAEHVLTALDRLGFSDYTIEAEAVLKDCKAVAAKRRRQSTRLENLGI 486
           I AEH++ AL+ L F +Y  EA  V  + K     R ++S++ E  G+
Sbjct: 66  IAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +1

Query: 184 LPRASINKMIKELVP-SVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHV 360
           LP A++ +++K  +P + +++ E+++ + +C +EFI  ++ EA+E C Q  +KTI  E V
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71

Query: 361 LTALDRLGFSDY 396
           L AL+ LGF +Y
Sbjct: 72  LLALNTLGFENY 83


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +1

Query: 163 SEEDELTLPRASINKMIKELVPSVR-VAFESRELILNCCTEFIHLISSEANEVCNQSNKK 339
           SE D+L LPR+ I +++K ++P    V  E+ + ++N  T F+  ++S + E+   +N+K
Sbjct: 10  SELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRK 69

Query: 340 TINAEHVLTALDRLGFSDYT 399
            +  + VL ALD + + +++
Sbjct: 70  ILMPQDVLNALDEIEYPEFS 89


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 199 INKMIKELVPSVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHVLTALDR 378
           IN  ++E+  S+R+AF  R         F  ++S+ +NE+ N         +HV    + 
Sbjct: 362 INTHMREIKESMRIAFADR------ANSFSKMLSTISNEITNLQGDWRDQLDHVEFLQEH 415

Query: 379 LGFSDYTIEAEAVLKD 426
           LG  +  + +  VL D
Sbjct: 416 LGPLEVELASVKVLYD 431


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 356 CSALIVFLLL*LHTSLASELIKCMNSVQQFRINSLDSNATRTEGTNSFIILF 201
           CSA+++FL   +H    + L++ +  ++     ++DS   R E   S I +F
Sbjct: 699 CSAIVLFLFSVMHLGAENPLLESIYLLEDMGSRTIDSK-VRLEKLKSAIEIF 749


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 88  HKKIEVGVHKFVTMGSPERELCPPPSEEDELTLPRASINKMIKE 219
           +  +EVGV ++     P+    PP S +     PR+S N  +K+
Sbjct: 461 YNSLEVGVDRYELGLDPQNITVPPLSHKTYQISPRSSANINVKK 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,186
Number of Sequences: 5004
Number of extensions: 38134
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)