Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_I05
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    28   2.0  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.6  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.6  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.6  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.6  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    27   3.5  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   8.0  

>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 366 SYPTFL*PV*TLLAASKIGKRMKSIPKKLSVSKHIFK 256
           SY   L P+   LA  K+ K+M    KK S  KHI +
Sbjct: 20  SYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILR 56


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 126 YNCFHVIYIMYLSRKIIALKIHGKILNQTIRE 221
           + C H   I++ ++K+I L I    LNQT++E
Sbjct: 116 WTCLHFSKIIFPAQKVICLYIFLFALNQTLQE 147


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 126 YNCFHVIYIMYLSRKIIALKIHGKILNQTIRE 221
           + C H   I++ ++K+I L I    LNQT++E
Sbjct: 116 WTCLHFSKIIFPAQKVICLYIFLFALNQTLQE 147


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 126 YNCFHVIYIMYLSRKIIALKIHGKILNQTIRE 221
           + C H   I++ ++K+I L I    LNQT++E
Sbjct: 88  WTCLHFSKIIFPAQKVICLYIFLFALNQTLQE 119


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 126 YNCFHVIYIMYLSRKIIALKIHGKILNQTIRE 221
           + C H   I++ ++K+I L I    LNQT++E
Sbjct: 116 WTCLHFSKIIFPAQKVICLYIFLFALNQTLQE 147


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 392 YKRFVENVQVILLFCNQYRLYWLLVKL 312
           Y  F EN+ ++LL    Y   W LVKL
Sbjct: 112 YSAFRENMPILLLVIIVYNFLWRLVKL 138


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 309 KRMKSIPKKLSVSKHIFKQNRVDDLFQVPF-RGLF 208
           KR+ SIP+K+  + H   Q    DL + PF  GLF
Sbjct: 72  KRLSSIPEKIRANYHEELQTTSYDLVRNPFTHGLF 106


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 394 STRDSLKMCKLSYFFVTSIDFTG 326
           ST DS  +C+LS  F  S+D TG
Sbjct: 185 STDDSNSLCRLSLKFGASLDDTG 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,169
Number of Sequences: 5004
Number of extensions: 60055
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)