Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_H24
(935 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.00
03_01_0515 - 3864796-3865425 31 1.3
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 29 5.3
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 5.3
09_02_0612 + 11239675-11240140,11240587-11240687 29 7.0
02_05_0496 - 29499959-29500653,29501039-29501093 29 7.0
09_02_0369 - 8012470-8013120 28 9.3
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 28 9.3
03_05_0576 + 25765137-25766420 28 9.3
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.3
01_06_0922 - 33022709-33023545 28 9.3
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.5 bits (68), Expect = 1.00
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +1
Query: 763 RLPPE-SXXHPRXXMXXXGXXXAXNXPKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
+LPPE P A P P PSG P SP P PPPPP
Sbjct: 519 QLPPEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAF-SPPPPPPPPPPPP 574
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +1
Query: 733 PGXSPSXEGIRLPPESXXHPRXXMXXXGXXXAXNXPKXGPXAVXPSGRXPXXXSPXPXXK 912
P SP E P + P + P GP P SP P
Sbjct: 29 PAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPL 88
Query: 913 TPPPPP 930
PPPPP
Sbjct: 89 PPPPPP 94
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 838 PKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
P P A P P P P +PPPPP
Sbjct: 90 PPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 814 GXXXAXNXPKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
G N P+ P + P + P P P + PPPPP
Sbjct: 326 GSFSPRNYPRHTP--MPPQQQQPGIYQPGPFPRPPPPPP 362
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = +1
Query: 769 PPESXX--HPRXXMXXXGXXXAXNXPKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
PP++ HP+ M P P P P P P +PPP P
Sbjct: 52 PPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPPVP 107
>09_02_0612 + 11239675-11240140,11240587-11240687
Length = 188
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/66 (25%), Positives = 21/66 (31%)
Frame = +2
Query: 611 GSXAGVNRSXPPXRXRPRIGXNFLCXHWTDXPAPPPFGCWDRXHXPXGRGYGSPQNXGTT 790
G A +S PP R G + W PAPP W R R + +
Sbjct: 72 GVAAWAPQSAPPARSSWSRGSASMVRAWVSQPAPPVRSSWSRGSASTVRAWAPQRRCPCQ 131
Query: 791 PXXXXG 808
P G
Sbjct: 132 PCVRAG 137
>02_05_0496 - 29499959-29500653,29501039-29501093
Length = 249
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 859 VXPSGRXPXXXSPXPXXKTPPPP 927
V P P SP P +TPPPP
Sbjct: 63 VIPPAEPPHQQSPEPQPQTPPPP 85
>09_02_0369 - 8012470-8013120
Length = 216
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 838 PKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
P+ P A PS P P P + PPPPP
Sbjct: 115 PRRSPAARPPSA--PETPLPLPCCEKPPPPP 143
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 874 RXPXXXSPXPXXKTPPPPP 930
R P P P +TPPPPP
Sbjct: 32 RNPTPPPPPPRRRTPPPPP 50
>03_05_0576 + 25765137-25766420
Length = 427
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 826 AXNXPKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
A K G PS SP P +PPPPP
Sbjct: 56 ASRRKKRGGPEAPPSPSPSPSPSPPPQPSSPPPPP 90
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 838 PKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
P P P P P P K PPPPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPP 357
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 826 AXNXPKXGPXAVXPSGRXPXXXSPXPXXKTPPPPP 930
A + + P V PS R P P PPPPP
Sbjct: 200 APSLQRKPPVPVRPSPRRVQEAPPSPLEPPPPPPP 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,653
Number of Sequences: 37544
Number of extensions: 239601
Number of successful extensions: 1387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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