Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H21
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   0.070
AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (...    29   3.4  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 27.9 bits (59), Expect(3) = 0.070
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 609 GAGGGGGXGXXXXKXXPPPXXG 674
           G GGGGG G       PPP  G
Sbjct: 41  GCGGGGGCGGGCAPPPPPPACG 62



 Score = 22.2 bits (45), Expect(3) = 0.070
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 591 FXFXXSGAGGGGG 629
           F F   G GGGGG
Sbjct: 18  FLFPSGGGGGGGG 30



 Score = 22.2 bits (45), Expect(3) = 0.070
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 606 SGAGGGGGXG 635
           SG GGGGG G
Sbjct: 22  SGGGGGGGGG 31


>AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (grd
           related) protein19 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 609 GAGGGGGXGXXXXKXXPPPXXGXXG 683
           G GGGGG G       PPP  G  G
Sbjct: 32  GCGGGGGGGGCCAPPPPPPVCGGCG 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,398,683
Number of Sequences: 27780
Number of extensions: 163505
Number of successful extensions: 671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)